RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

34 rows where analysis = "blastn", bioproject = "PRJNA665531" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 3

tax_superkingdom 1

  • Viruses · 34 ✖

bioproject 1

  • PRJNA665531 · 34 ✖

analysis 1

  • blastn · 34 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1905347 1905347 PRJNA665531_P_NODE_13782_length_279_cov_1.582524_g13546_i0 PRJNA665531 13782 279 1.582524 4.41524196 Caudoviricetes sp. 2832643 Viruses Viruses 516 7.58e-142   NTclustered gi|2914941530|gb|OR221752.1| 2832643 g13546 i0 100 1 279 0 100 0 1 279 46521 46799 MAG: Caudoviricetes sp. isolate MSP1281 genomic sequence blastn 279 516 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
2437474 2437474 PRJNA665531_P_NODE_12642_length_291_cov_8.853211_g12406_i0 PRJNA665531 12642 291 8.853211 25.76284401 Sepunavirus 1980928 Viruses Viruses 501 2.23e-137   NTclustered gi|971761109|ref|NC_028962.1| 1572704 g12406 i0 100 16.7697594501718 271 0 93 0 21 291 137728 137458 Staphylococcus phage phiIPLA-C1C, complete genome blastn 4880 501 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Herelleviridae Sepunavirus Sepunavirus IPLAC1C
3180104 3180104 PRJNA665531_P_NODE_11943_length_300_cov_2.440529_g11707_i0 PRJNA665531 11943 300 2.440529 7.321587 Chemarfal virus 260 3063286 Viruses Viruses 512 1.07e-140   NTclustered gi|2626079958|gb|OR270550.1| 3063286 g11707 i0 99.643 0.933333333333333 280 1 93 0 21 300 799 520 MAG: Chemarfal virus 260 isolate ML188 genomic sequence blastn 280 512 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales     Chemarfal virus 260
3180459 3180459 PRJNA665531_P_NODE_8103_length_371_cov_1.382550_g7867_i0 PRJNA665531 8103 371 1.38255 5.1292605 Pestivirus bovis 3052619 Viruses Viruses 647 0   NTclustered gi|1072900293|gb|KU756226.1| 981676 g7867 i0 98.113 99.989218328841 371 7 100 0 1 371 4339 3969 Bovine viral diarrhea virus 1b strain HJ-1 polyprotein gene, complete cds blastn 37096 647 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
3180473 3180473 PRJNA665531_P_NODE_8743_length_356_cov_1.424028_g8507_i0 PRJNA665531 8743 356 1.424028 5.06953968 Alphaendornavirus capsici 3426171 Viruses Viruses 658 0   NTclustered gi|2558625253|gb|OQ863603.1| 354328 g8507 i0 100 38.9719101123596 356 0 100 0 1 356 14116 14471 Bell pepper alphaendornavirus isolate BHJ1/22, complete genome blastn 13874 658 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Endornaviridae Alphaendornavirus Alphaendornavirus capsici
4457289 4457289 PRJNA665531_P_NODE_19144_length_242_cov_0.911243_g18908_i0 PRJNA665531 19144 242 0.911243 2.20520806 Caudoviricetes sp. 2832643 Viruses Viruses 403 5.22e-108   NTclustered gi|2057182940|tpg|BK059062.1| 2832643 g18908 i0 97.083 17.6694214876033 240 6 99 1 1 240 33216 33454 MAG TPA_asm: Caudoviricetes sp. isolate ctGwI2, partial genome blastn 4276 403 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
4457308 4457308 PRJNA665531_P_NODE_19844_length_233_cov_2.156250_g19608_i0 PRJNA665531 19844 233 2.15625 5.0240625 Caudoviricetes sp. 2832643 Viruses Viruses 322 1.44e-83   NTclustered gi|2914993804|gb|OR222211.1| 2832643 g19608 i0 91.845 22.2188841201717 233 15 99 4 2 233 50084 50313 MAG: Caudoviricetes sp. isolate MSP0761 genomic sequence blastn 5177 322 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
5732734 5732734 PRJNA665531_P_NODE_14505_length_272_cov_1.331658_g14269_i0 PRJNA665531 14505 272 1.331658 3.62210976 Pestivirus bovis 3052619 Viruses Viruses 411 3.569999999999999e-110   NTclustered gi|34596501|gb|AY182138.1| 11099 g14269 i0 94.382 92.8602941176471 267 15 98 0 1 267 749 483 Pestivirus type 1 strain NCP8 polyprotein mRNA, partial cds blastn 25258 411 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
7007948 7007948 PRJNA665531_P_NODE_16706_length_253_cov_1.238889_g16470_i0 PRJNA665531 16706 253 1.238889 3.13438917 Alphachrysovirus perseae 2955248 Viruses Viruses 468 1.92e-127   NTclustered gi|1694999067|ref|NC_043508.1| 1587509 g16470 i0 100 1 253 0 100 0 1 253 3028 2776 Persea americana chrysovirus segment RNA2, complete sequence blastn 253 468 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Chrysoviridae Alphachrysovirus Alphachrysovirus perseae
7008006 7008006 PRJNA665531_P_NODE_19326_length_241_cov_0.916667_g19090_i0 PRJNA665531 19326 241 0.916667 2.20916747 Caudoviricetes sp. 2832643 Viruses Viruses 252 1.99e-62   NTclustered gi|2054791465|tpg|BK049930.1| 2832643 g19090 i0 89.5 21.2157676348548 200 20 83 1 43 241 4935 5134 MAG TPA_asm: Caudoviricetes sp. isolate ct7mf1, partial genome blastn 5113 252 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
8282442 8282442 PRJNA665531_P_NODE_12127_length_298_cov_1.586667_g11891_i0 PRJNA665531 12127 298 1.586667 4.72826766 Caudoviricetes sp. 2832643 Viruses Viruses 518 2.2699999999999998e-142   NTclustered gi|2054694536|tpg|BK052869.1| 2832643 g11891 i0 97.987 3.16442953020134 298 6 100 0 1 298 87013 86716 MAG TPA_asm: Caudoviricetes sp. isolate ct7qV16, partial genome blastn 943 518 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
8282643 8282643 PRJNA665531_P_NODE_2927_length_667_cov_1.437710_g2705_i0 PRJNA665531 2927 667 1.43771 9.5895257 Malassezia restricta virus MrV40L 2727863 Viruses Viruses 797 0   NTclustered gi|1832308141|gb|MN603497.1| 2727863 g2705 i0 88.386 0.99400299850075 663 75 99 2 6 667 1925 2586 Malassezia restricta virus MrV40L, complete genome blastn 663 797 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Totiviridae   Malassezia restricta virus MrV40L
9557711 9557711 PRJNA665531_P_NODE_12288_length_296_cov_1.381166_g12052_i0 PRJNA665531 12288 296 1.381166 4.08825136 Alphachrysovirus perseae 2955248 Viruses Viruses 516 8.11e-142   NTclustered gi|1694999067|ref|NC_043508.1| 1587509 g12052 i0 98.311 1 296 2 100 1 1 296 2215 2507 Persea americana chrysovirus segment RNA2, complete sequence blastn 296 516 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Chrysoviridae Alphachrysovirus Alphachrysovirus perseae
9557728 9557728 PRJNA665531_P_NODE_12848_length_289_cov_1.611111_g12612_i0 PRJNA665531 12848 289 1.611111 4.65611079 Caudoviricetes sp. 2832643 Viruses Viruses 420 6.359999999999998e-113   NTclustered gi|2054462587|tpg|BK031569.1| 2832643 g12612 i0 94.182 9.3840830449827 275 16 95 0 15 289 602 876 MAG TPA_asm: Caudoviricetes sp. isolate ctfNY3, partial genome blastn 2712 420 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
10090890 10090890 PRJNA665531_P_NODE_7368_length_392_cov_1.890282_g7132_i0 PRJNA665531 7368 392 1.890282 7.40990544 root 1 Root_unresolved Root_unresolved 719 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g7132 i0 99.745 100.02806122449 392 1 100 0 1 392 1572 1963 Moloney murine leukemia virus, complete genome blastn 39211 719 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
10833392 10833392 PRJNA665531_P_NODE_14449_length_272_cov_3.748744_g14213_i0 PRJNA665531 14449 272 3.748744 10.19658368 Alphaendornavirus capsici 3426171 Viruses Viruses 503 5.729999999999998e-138   NTclustered gi|2558625253|gb|OQ863603.1| 354328 g14213 i0 100 31.9558823529412 272 0 100 0 1 272 12052 11781 Bell pepper alphaendornavirus isolate BHJ1/22, complete genome blastn 8692 503 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Endornaviridae Alphaendornavirus Alphaendornavirus capsici
10833503 10833503 PRJNA665531_P_NODE_19369_length_241_cov_0.916667_g19133_i0 PRJNA665531 19369 241 0.916667 2.20916747 Caudoviricetes sp. 2832643 Viruses Viruses 392 1.1299999999999999e-104   NTclustered gi|2052220891|tpg|BK056516.1| 2832643 g19133 i0 95.902 6.45643153526971 244 7 100 1 1 241 102 345 MAG TPA_asm: Caudoviricetes sp. isolate ctjVN1, partial genome blastn 1556 392 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
11365806 11365806 PRJNA665531_P_NODE_19429_length_240_cov_2.455090_g19193_i0 PRJNA665531 19429 240 2.45509 5.892216 Pestivirus 11095 Viruses Viruses 405 1.44e-108   NTclustered gi|2731951075|gb|PP770551.1| 11099 g19193 i0 97.083 99.9833333333333 240 7 100 0 1 240 10337 10576 Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome blastn 23996 405 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
12108690 12108690 PRJNA665531_P_NODE_18210_length_246_cov_0.890173_g17974_i0 PRJNA665531 18210 246 0.890173 2.18982558 Pestivirus bovis 3052619 Viruses Viruses 418 1.9e-112   NTclustered gi|887497285|gb|KR029825.1| 11099 g17974 i0 97.541 99.9593495934959 244 6 99 0 1 244 8037 8280 Bovine viral diarrhea virus 1 isolate Egy/Ismailia/2014, complete genome blastn 24590 418 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
12108922 12108922 PRJNA665531_P_NODE_8730_length_356_cov_2.063604_g8494_i0 PRJNA665531 8730 356 2.063604 7.34643024 Potexvirus pepini 3433856 Viruses Viruses 604 2.059999999999999e-168   NTclustered gi|384872966|gb|JQ314460.1| 112229 g8494 i0 98.82 38.4325842696629 339 4 95 0 18 356 5884 6222 Pepino mosaic virus strain US1_EF09_58, complete genome blastn 13682 604 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
14658321 14658321 PRJNA665531_P_NODE_18432_length_245_cov_0.895349_g18196_i0 PRJNA665531 18432 245 0.895349 2.19360505 Bacteriophage sp. 38018 Viruses Viruses 453 5.1900000000000006e-123   NTclustered gi|2058076697|tpg|BK043053.1| 38018 g18196 i0 100 1.35918367346939 245 0 100 0 1 245 18436 18680 MAG TPA_asm: Bacteriophage sp. isolate ctzYR13, partial genome blastn 333 453 1 Viruses               Bacteriophage sp.
14658578 14658578 PRJNA665531_P_NODE_9592_length_338_cov_1.283019_g9356_i0 PRJNA665531 9592 338 1.283019 4.33660422 Caudoviricetes sp. 2832643 Viruses Viruses 547 3.339999999999999e-151   NTclustered gi|2054474797|tpg|BK031814.1| 2832643 g9356 i0 95.858 1 338 14 100 0 1 338 20639 20976 MAG TPA_asm: Caudoviricetes sp. isolate ctnNF5, partial genome blastn 338 547 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
17207492 17207492 PRJNA665531_P_NODE_3494_length_606_cov_1.632270_g3267_i0 PRJNA665531 3494 606 1.63227 9.8915562 Totivirus sp. 2776824 Viruses Viruses 429 2.37e-115   NTclustered gi|1918615616|gb|MT949667.1| 2776824 g3267 i0 81.89 1.1963696369637 508 92 84 0 13 520 832 1339 Totivirus sp. isolate sequence_5835 genomic sequence blastn 725 429 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Orthototiviridae Totivirus Totivirus sp.
18481715 18481715 PRJNA665531_P_NODE_16415_length_255_cov_1.692308_g16179_i0 PRJNA665531 16415 255 1.692308 4.3153854 Pestivirus bovis 3052619 Viruses Viruses 411 3.3199999999999995e-110   NTclustered gi|1523731873|gb|MH490943.1| 981676 g16179 i0 95.686 100.709803921569 255 11 100 0 1 255 784 1038 Bovine viral diarrhea virus 1b strain BVDV BJ-2016, complete genome blastn 25681 411 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
18481848 18481848 PRJNA665531_P_NODE_35_length_2724_cov_21.030177_g28_i0 PRJNA665531 35 2724 21.030177 572.86202148 Malassezia restricta virus MrV40L 2727863 Viruses Viruses 4748 0   NTclustered gi|1832308141|gb|MN603497.1| 2727863 g28 i0 98.372 1.43355359765051 2703 44 99 0 1 2703 2703 1 Malassezia restricta virus MrV40L, complete genome blastn 3905 4748 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Totiviridae   Malassezia restricta virus MrV40L
19756106 19756106 PRJNA665531_P_NODE_11056_length_313_cov_1.283333_g10820_i0 PRJNA665531 11056 313 1.283333 4.01683229 Chemarfal virus 258 3063149 Viruses Viruses 579 1.0899999999999999e-160   NTclustered gi|2626079799|gb|OR270470.1| 3063149 g10820 i0 100 1.89137380191693 313 0 100 0 1 313 1253 941 MAG: Chemarfal virus 258 isolate ML188 genomic sequence blastn 592 579 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales     Chemarfal virus 258
19756412 19756412 PRJNA665531_P_NODE_4896_length_497_cov_3.820755_g4661_i0 PRJNA665531 4896 497 3.820755 18.98915235 Herelleviridae sp. 2831613 Viruses Viruses 54.7 0.013   NTclustered gi|2053226277|tpg|BK035376.1| 2831613 g4661 i0 94.444 0.0724346076458753 36 1 7 1 10 45 98078 98044 MAG TPA_asm: Herelleviridae sp. isolate ctdGG3, partial genome blastn 36 54.7 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Herelleviridae   Herelleviridae sp.
19756444 19756444 PRJNA665531_P_NODE_6016_length_441_cov_1.796196_g5780_i0 PRJNA665531 6016 441 1.796196 7.92122436 Chemarfal virus 260 3063286 Viruses Viruses 815 0   NTclustered gi|2626079958|gb|OR270550.1| 3063286 g5780 i0 100 1 441 0 100 0 1 441 799 1239 MAG: Chemarfal virus 260 isolate ML188 genomic sequence blastn 441 815 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales     Chemarfal virus 260
22306516 22306516 PRJNA665531_P_NODE_1198_length_1063_cov_49.200000_g1069_i0 PRJNA665531 1198 1063 49.2 522.996 Totivirus sp. 2776824 Viruses Viruses 630 1.0899999999999997e-175   NTclustered gi|1918615619|gb|MT949668.1| 2776824 g1069 i0 81.952 0.703668861712135 748 131 70 4 129 874 1 746 Totivirus sp. isolate sequence_10295 genomic sequence blastn 748 630 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Orthototiviridae Totivirus Totivirus sp.
22306597 22306597 PRJNA665531_P_NODE_15538_length_262_cov_2.402116_g15302_i0 PRJNA665531 15538 262 2.402116 6.29354392 Caudoviricetes sp. 2832643 Viruses Viruses 446 9.379999999999998e-121   NTclustered gi|2914935464|gb|OR221651.1| 2832643 g15302 i0 97.328 2.99236641221374 262 7 100 0 1 262 36001 35740 MAG: Caudoviricetes sp. isolate MSP1402 genomic sequence blastn 784 446 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
22306604 22306604 PRJNA665531_P_NODE_15898_length_259_cov_2.080645_g15662_i0 PRJNA665531 15898 259 2.080645 5.38887055 Chemarfal virus 260 3063286 Viruses Viruses 263 1e-65   NTclustered gi|2626079958|gb|OR270550.1| 3063286 g15662 i0 95.706 1 163 7 63 0 1 163 163 1 MAG: Chemarfal virus 260 isolate ML188 genomic sequence blastn 259 263 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales     Chemarfal virus 260
23582203 23582203 PRJNA665531_P_NODE_7399_length_391_cov_2.292453_g7163_i0 PRJNA665531 7399 391 2.292453 8.96349123 Malassezia restricta virus MrV40L 2727863 Viruses Viruses 656 0   NTclustered gi|1832308141|gb|MN603497.1| 2727863 g7163 i0 96.931 1.77493606138107 391 12 100 0 1 391 3260 2870 Malassezia restricta virus MrV40L, complete genome blastn 694 656 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Totiviridae   Malassezia restricta virus MrV40L
24855831 24855831 PRJNA665531_P_NODE_8660_length_358_cov_1.487719_g8424_i0 PRJNA665531 8660 358 1.487719 5.32603402 Totivirus sp. 2776824 Viruses Viruses 296 1.42e-75   NTclustered gi|1918615616|gb|MT949667.1| 2776824 g8424 i0 82.738 1.36033519553073 336 54 93 4 1 334 898 1231 Totivirus sp. isolate sequence_5835 genomic sequence blastn 487 296 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Orthototiviridae Totivirus Totivirus sp.
25388768 25388768 PRJNA665531_P_NODE_6980_length_404_cov_3.963746_g6744_i0 PRJNA665531 6980 404 3.963746 16.01353384 Tobamovirus 12234 Viruses Viruses 710 0   NTclustered gi|2837380181|gb|PP099897.1| 1761477 g6744 i0 100 95.049504950495 384 0 95 0 1 384 3797 3414 Tomato brown rugose fruit virus isolate NPPO-NL 36648757, complete genome blastn 38400 710 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;