RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA665531" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA665531 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3180459 3180459 PRJNA665531_P_NODE_8103_length_371_cov_1.382550_g7867_i0 PRJNA665531 8103 371 1.38255 5.1292605 Pestivirus bovis 3052619 Viruses Viruses 647 0   NTclustered gi|1072900293|gb|KU756226.1| 981676 g7867 i0 98.113 99.989218328841 371 7 100 0 1 371 4339 3969 Bovine viral diarrhea virus 1b strain HJ-1 polyprotein gene, complete cds blastn 37096 647 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
3180473 3180473 PRJNA665531_P_NODE_8743_length_356_cov_1.424028_g8507_i0 PRJNA665531 8743 356 1.424028 5.06953968 Alphaendornavirus capsici 3426171 Viruses Viruses 658 0   NTclustered gi|2558625253|gb|OQ863603.1| 354328 g8507 i0 100 38.9719101123596 356 0 100 0 1 356 14116 14471 Bell pepper alphaendornavirus isolate BHJ1/22, complete genome blastn 13874 658 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Endornaviridae Alphaendornavirus Alphaendornavirus capsici
5732734 5732734 PRJNA665531_P_NODE_14505_length_272_cov_1.331658_g14269_i0 PRJNA665531 14505 272 1.331658 3.62210976 Pestivirus bovis 3052619 Viruses Viruses 411 3.569999999999999e-110   NTclustered gi|34596501|gb|AY182138.1| 11099 g14269 i0 94.382 92.8602941176471 267 15 98 0 1 267 749 483 Pestivirus type 1 strain NCP8 polyprotein mRNA, partial cds blastn 25258 411 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
10833392 10833392 PRJNA665531_P_NODE_14449_length_272_cov_3.748744_g14213_i0 PRJNA665531 14449 272 3.748744 10.19658368 Alphaendornavirus capsici 3426171 Viruses Viruses 503 5.729999999999998e-138   NTclustered gi|2558625253|gb|OQ863603.1| 354328 g14213 i0 100 31.9558823529412 272 0 100 0 1 272 12052 11781 Bell pepper alphaendornavirus isolate BHJ1/22, complete genome blastn 8692 503 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Endornaviridae Alphaendornavirus Alphaendornavirus capsici
11365806 11365806 PRJNA665531_P_NODE_19429_length_240_cov_2.455090_g19193_i0 PRJNA665531 19429 240 2.45509 5.892216 Pestivirus 11095 Viruses Viruses 405 1.44e-108   NTclustered gi|2731951075|gb|PP770551.1| 11099 g19193 i0 97.083 99.9833333333333 240 7 100 0 1 240 10337 10576 Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome blastn 23996 405 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
12108690 12108690 PRJNA665531_P_NODE_18210_length_246_cov_0.890173_g17974_i0 PRJNA665531 18210 246 0.890173 2.18982558 Pestivirus bovis 3052619 Viruses Viruses 418 1.9e-112   NTclustered gi|887497285|gb|KR029825.1| 11099 g17974 i0 97.541 99.9593495934959 244 6 99 0 1 244 8037 8280 Bovine viral diarrhea virus 1 isolate Egy/Ismailia/2014, complete genome blastn 24590 418 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
12108922 12108922 PRJNA665531_P_NODE_8730_length_356_cov_2.063604_g8494_i0 PRJNA665531 8730 356 2.063604 7.34643024 Potexvirus pepini 3433856 Viruses Viruses 604 2.059999999999999e-168   NTclustered gi|384872966|gb|JQ314460.1| 112229 g8494 i0 98.82 38.4325842696629 339 4 95 0 18 356 5884 6222 Pepino mosaic virus strain US1_EF09_58, complete genome blastn 13682 604 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
18481715 18481715 PRJNA665531_P_NODE_16415_length_255_cov_1.692308_g16179_i0 PRJNA665531 16415 255 1.692308 4.3153854 Pestivirus bovis 3052619 Viruses Viruses 411 3.3199999999999995e-110   NTclustered gi|1523731873|gb|MH490943.1| 981676 g16179 i0 95.686 100.709803921569 255 11 100 0 1 255 784 1038 Bovine viral diarrhea virus 1b strain BVDV BJ-2016, complete genome blastn 25681 411 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
25388768 25388768 PRJNA665531_P_NODE_6980_length_404_cov_3.963746_g6744_i0 PRJNA665531 6980 404 3.963746 16.01353384 Tobamovirus 12234 Viruses Viruses 710 0   NTclustered gi|2837380181|gb|PP099897.1| 1761477 g6744 i0 100 95.049504950495 384 0 95 0 1 384 3797 3414 Tomato brown rugose fruit virus isolate NPPO-NL 36648757, complete genome blastn 38400 710 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;