RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA665531" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA665531 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
629499 629499 PRJNA665531_P_NODE_341_length_1657_cov_5.220960_g294_i0 PRJNA665531 341 1657 5.22096 86.5113072 Campylobacter showae 204 Bacteria Bacteria 2983 0   NTclustered gi|1483583529|emb|LT631453.1| 204 g294 i0 99.815 228.212432106216 1624 3 98 0 21 1644 390986 389363 Campylobacter showae strain B91_SCBr genome assembly, chromosome: I blastn 378148 2983 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
4990603 4990603 PRJNA665531_P_NODE_19704_length_235_cov_2.746914_g19468_i0 PRJNA665531 19704 235 2.746914 6.4552479 Campylobacter 194 Bacteria Bacteria 435 1.79e-117   NTclustered gi|1207769205|gb|MF351718.1| 199 g19468 i0 100 231.297872340426 235 0 100 0 1 235 656 890 Campylobacter concisus strain H11O-S1 23S ribosomal RNA gene, partial sequence blastn 54355 435 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
13916279 13916279 PRJNA665531_P_NODE_19311_length_241_cov_0.976190_g19075_i0 PRJNA665531 19311 241 0.97619 2.3526179 Sulfurospirillum 57665 Bacteria Bacteria 331 2.49e-86   NTclustered gi|470485421|ref|NR_076700.1| 65553 g19075 i0 92.982 306.020746887967 228 15 94 1 5 231 867 640 Sulfurospirillum deleyianum strain 'Spirillum' 5175 23S ribosomal RNA gene, complete sequence blastn 73751 331 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum deleyianum
15190866 15190866 PRJNA665531_P_NODE_5312_length_474_cov_8.224439_g5076_i0 PRJNA665531 5312 474 8.224439 38.98384086 Campylobacter 194 Bacteria Bacteria 806 0   NTclustered gi|1483583505|emb|LT631429.1| 204 g5076 i0 99.772 232.331223628692 439 1 93 0 22 460 30035 29597 Campylobacter showae genome assembly, plasmid: V blastn 110125 806 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;