RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA665531" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA665531 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7007999 7007999 PRJNA665531_P_NODE_18766_length_243_cov_1.811765_g18530_i0 PRJNA665531 18766 243 1.811765 4.40258895 uncultured Sporadotrichida 1572324 SAR_Eukaryotes SAR_Eukaryotes 444 3.09e-120   NTclustered gi|724028166|gb|KP099825.1| 1572324 g18530 i0 99.588 95.3292181069959 243 1 100 0 1 243 598 840 Uncultured Sporadotrichida clone b88 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23165 444 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida     uncultured Sporadotrichida
10833327 10833327 PRJNA665531_P_NODE_11729_length_303_cov_1.947826_g11493_i0 PRJNA665531 11729 303 1.947826 5.90191278 Plasmodium reichenowi 5854 SAR_Eukaryotes SAR_Eukaryotes 156 2.09e-33   NTclustered gi|1145258831|ref|XM_012907240.2| 5854 g11493 i0 76.95 19.6468646864686 282 59 92 5 3 281 523 801 Plasmodium reichenowi heat shock protein 70, putative partial mRNA blastn 5953 156 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi
13916260 13916260 PRJNA665531_P_NODE_16731_length_252_cov_4.972067_g16495_i0 PRJNA665531 16731 252 4.972067 12.52960884 Viridiplantae 33090 SAR_Eukaryotes SAR_Eukaryotes 113 1.03e-20   NTclustered gi|2862228894|gb|PQ645528.1| 44447 g16495 i0 95.714 28.4484126984127 70 3 28 0 22 91 3887 3956 Pseudo-nitzschia delicatissima isolate AGSB0398 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7169 113 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia delicatissima

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;