RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA665531" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA665531 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2437537 2437537 PRJNA665531_P_NODE_8302_length_365_cov_9.695205_g8066_i0 PRJNA665531 8302 365 9.695205 35.38749825 root 1 Root_unresolved Root_unresolved 638 2.0899999999999996e-178   NTclustered gi|691483300|gb|KM006914.1| 1211 g8066 i0 100 94.8 345 0 95 0 21 365 121 465 Uncultured cyanobacterium clone 4B-23 16S ribosomal RNA gene, partial sequence blastn 34602 638 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
7007932 7007932 PRJNA665531_P_NODE_16086_length_258_cov_0.832432_g15850_i0 PRJNA665531 16086 258 0.832432 2.14767456 Phormidium sp. NIES-2121 2510782 Bacteria Bacteria 440 4.2899999999999984e-119   NTclustered gi|1566846234|dbj|LC455612.1| 2510782 g15850 i0 98.4 164.220930232558 250 4 97 0 1 250 1013 764 Phormidium sp. NIES-2121 gene for 23S ribosomal RNA, partial sequence blastn 42369 440 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Oscillatoriaceae Phormidium Phormidium sp. NIES-2121
12641552 12641552 PRJNA665531_P_NODE_9350_length_343_cov_0.892593_g9114_i0 PRJNA665531 9350 343 0.892593 3.06159399 Oscillatoriales 1150 Bacteria Bacteria 599 9.239999999999999e-167   NTclustered gi|1566846289|dbj|LC455669.1| 118562 g9114 i0 99.694 152.556851311953 327 1 95 0 17 343 874 1200 Arthrospira platensis NIES-46 gene for 23S ribosomal RNA, partial sequence blastn 52327 604 0.991721854304636 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Sirenicapillariaceae Limnospira Limnospira platensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;