RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA664479" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA664479 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10833276 10833276 PRJNA664479_S_NODE_16229_length_164_cov_1.773913_g16153_i0 PRJNA664479 16229 164 1.773913 2.90921732 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 104 3.73e-18   NTclustered gi|829196136|ref|XM_001025866.3| 312017 g16153 i0 91.892 0.451219512195122 74 6 45 0 91 164 510 437 Tetrahymena thermophila SB210 translationally-controlled tumor-like protein partial mRNA blastn 74 104 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
12108493 12108493 PRJNA664479_S_NODE_7970_length_202_cov_1.235294_g7894_i0 PRJNA664479 7970 202 1.235294 2.49529388 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 248 2.09e-61   NTclustered gi|829194717|ref|XM_001025217.3| 312017 g7894 i0 88.78 1.01485148514851 205 20 100 1 1 202 349 553 Tetrahymena thermophila SB210 ubiquitin-40S ribosomal protein S27a partial mRNA blastn 205 248 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;