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contig_metadata

31 rows where analysis = "blastn", bioproject = "PRJNA664479" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA664479 · 31 ✖

analysis 1

  • blastn · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1905267 1905267 PRJNA664479_S_NODE_8142_length_201_cov_0.881579_g8066_i0 PRJNA664479 8142 201 0.881579 1.77197379 Rhinatrema bivittatum 194408 Chordata Chordata 54.7 0.005   NTclustered gi|1694524554|ref|XM_029583262.1| 194408 g8066 i0 100 0.43283582089552203 29 0 14 0 1 29 1736 1708 PREDICTED: Rhinatrema bivittatum RUN and FYVE domain containing 1 (RUFY1), transcript variant X2, mRNA blastn 87 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Rhinatrematidae Rhinatrema Rhinatrema bivittatum
3180059 3180059 PRJNA664479_S_NODE_7763_length_204_cov_0.716129_g7687_i0 PRJNA664479 7763 204 0.716129 1.46090316 Calidris pugnax 198806 Chordata Chordata 62.1 2.96e-5   NTclustered gi|961008062|ref|XM_014964586.1| 198806 g7687 i0 94.872 0.372549019607843 39 2 19 0 8 46 601 563 PREDICTED: Calidris pugnax partner of NOB1 homolog (PNO1), mRNA blastn 76 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Scolopacidae Calidris Calidris pugnax
3180061 3180061 PRJNA664479_S_NODE_8943_length_195_cov_0.931507_g8867_i0 PRJNA664479 8943 195 0.931507 1.81643865 Sorex araneus 42254 Chordata Chordata 100 5.93e-17   NTclustered gi|2487291930|ref|XM_055124528.1| 42254 g8867 i0 78.912 0.753846153846154 147 31 75 0 1 147 327 473 PREDICTED: Sorex araneus actin, alpha skeletal muscle-like (LOC101551380), mRNA blastn 147 100 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Sorex Sorex araneus
4990556 4990556 PRJNA664479_S_NODE_6704_length_214_cov_1.236364_g6628_i0 PRJNA664479 6704 214 1.236364 2.64581896 Mus 10088 Chordata Chordata 396 7.559999999999996e-106   NTclustered gi|756142290|gb|KP260515.1| 10090 g6628 i0 100 100 214 0 100 0 1 214 11532 11319 Mus musculus strain ME mitochondrion, complete genome blastn 21400 396 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
7007793 7007793 PRJNA664479_S_NODE_6726_length_214_cov_0.927273_g6650_i0 PRJNA664479 6726 214 0.927273 1.98436422 Meleagris gallopavo 9103 Chordata Chordata 56.5 0.001   NTclustered gi|2721460876|emb|HG999684.4| 9103 g6650 i0 97.059 0.158878504672897 34 0 16 1 34 67 52808345 52808313 Meleagris gallopavo genome assembly, chromosome: 4 blastn 34 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
12641470 12641470 PRJNA664479_S_NODE_14910_length_166_cov_1.307692_g14834_i0 PRJNA664479 14910 166 1.307692 2.17076872 Mus 10088 Chordata Chordata 307 2.69e-79   NTclustered gi|2746383373|gb|PP914175.1| 10090 g14834 i0 100 100 166 0 100 0 1 166 795 630 Mus musculus isolate SK3265 cytochrome b (CYTB) gene, partial cds; mitochondrial blastn 16600 307 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
13383213 13383213 PRJNA664479_S_NODE_471_length_662_cov_2.278956_g407_i0 PRJNA664479 471 662 2.278956 15.08668872 Spinus spinus 160760 Chordata Chordata 54.7 0.018   NTclustered gi|2917663466|emb|OZ228753.1| 160760 g407 i0 94.444 0.108761329305136 36 1 5 1 516 550 37205157 37205122 Spinus spinus genome assembly, chromosome: 5 blastn 72 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Spinus Spinus spinus
14658120 14658120 PRJNA664479_S_NODE_6412_length_217_cov_1.821429_g6336_i0 PRJNA664479 6412 217 1.821429 3.95250093 Mus musculus 10090 Chordata Chordata 54.7 0.005   NTclustered gi|71533340|gb|AC156162.2| 10090 g6336 i0 100 0.133640552995392 29 0 13 0 74 102 100755 100783 Mus musculus BAC clone RP24-342A17 from chromosome 9, complete sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
14658121 14658121 PRJNA664479_S_NODE_9832_length_189_cov_1.092857_g9756_i0 PRJNA664479 9832 189 1.092857 2.06549973 Fringilla coelebs 37598 Chordata Chordata 60.2 9.69e-5   NTclustered gi|2917621595|emb|OZ228708.1| 37598 g9756 i0 94.872 0.206349206349206 39 0 21 2 101 139 5888889 5888853 Fringilla coelebs genome assembly, chromosome: 19 blastn 39 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Fringilla Fringilla coelebs
15190807 15190807 PRJNA664479_S_NODE_12292_length_175_cov_2.547619_g12216_i0 PRJNA664479 12292 175 2.547619 4.45833325 Mus 10088 Chordata Chordata 324 2.83e-84   NTclustered gi|846387586|dbj|LC061956.1| 10090 g12216 i0 100 100 175 0 100 0 1 175 944 770 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_5 blastn 17500 324 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
15932012 15932012 PRJNA664479_S_NODE_13833_length_169_cov_0.708333_g13757_i0 PRJNA664479 13833 169 0.708333 1.19708277 Ptychadena cooperi 356243 Chordata Chordata 73.1 1.08e-8   NTclustered gi|2550526571|gb|OR228619.1| 356243 g13757 i0 80 12.9881656804734 105 16 61 5 18 120 9407 9508 Ptychadena cooperi voucher XF-16-019 mitochondrion, partial genome blastn 2195 73.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ptychadenidae Ptychadena Ptychadena cooperi
15932023 15932023 PRJNA664479_S_NODE_19773_length_153_cov_2.250000_g19697_i0 PRJNA664479 19773 153 2.25 3.4425 Lampetra planeri 7750 Chordata Chordata 60.2 7.49e-5   NTclustered gi|2814953432|emb|OZ078327.2| 7750 g19697 i0 100 3.62091503267974 32 0 21 0 3 34 6399332 6399363 Lampetra planeri genome assembly, chromosome: 4 blastn 554 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
16465095 16465095 PRJNA664479_S_NODE_9033_length_194_cov_1.289655_g8957_i0 PRJNA664479 9033 194 1.289655 2.5019307 root 1 Root_unresolved Root_unresolved 326 8.94e-85   NTclustered gi|2904934840|gb|PQ737764.1| 10090 g8957 i0 96.907 369.438144329897 194 6 100 0 1 194 285 92 Mus musculus lncRNA174 lncRNA, complete sequence blastn 71671 326 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
17207210 17207210 PRJNA664479_S_NODE_2654_length_305_cov_3.378906_g2578_i0 PRJNA664479 2654 305 3.378906 10.3056633 Apteryx mantelli 2696672 Chordata Chordata 54.7 0.008   NTclustered gi|840016890|emb|LK066393.1| 202946 g2578 i0 100 0.095081967213114807 29 0 10 0 72 100 207577 207549 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold1803 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli
17207212 17207212 PRJNA664479_S_NODE_3174_length_284_cov_1.851064_g3098_i0 PRJNA664479 3174 284 1.851064 5.25702176 Mesoplodon densirostris 48708 Chordata Chordata 54.7 0.007   NTclustered gi|2589212057|ref|XM_060089374.1| 48708 g3098 i0 96.97 0.232394366197183 33 0 11 1 99 130 2543 2511 PREDICTED: Mesoplodon densirostris protein tyrosine phosphatase 4A2 (PTP4A2), transcript variant X2, mRNA blastn 66 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Ziphiidae Mesoplodon Mesoplodon densirostris
18481555 18481555 PRJNA664479_S_NODE_1615_length_380_cov_2.815710_g1539_i0 PRJNA664479 1615 380 2.81571 10.699698 Mus musculus 10090 Chordata Chordata 56.5 0.003   NTclustered gi|75813607|gb|AC161055.2| 10090 g1539 i0 96.97 0.0868421052631579 33 1 9 0 47 79 174414 174446 Mus musculus BAC clone RP23-287L7 from chromosome 12, complete sequence blastn 33 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
18481559 18481559 PRJNA664479_S_NODE_18275_length_162_cov_0.893805_g18199_i0 PRJNA664479 18275 162 0.893805 1.4479641 Colius striatus 57412 Chordata Chordata 65.8 1.73e-6   NTclustered gi|2643721811|ref|XM_062013660.1| 57412 g18199 i0 85.714 1.27777777777778 63 7 38 2 9 70 363 424 PREDICTED: Colius striatus troponin I1, slow skeletal type (TNNI1), mRNA blastn 207 65.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Coliiformes Coliidae Colius Colius striatus
18481561 18481561 PRJNA664479_S_NODE_2215_length_333_cov_0.725352_g2139_i0 PRJNA664479 2215 333 0.725352 2.41542216 Apus apus 8895 Chordata Chordata 54.7 0.009   NTclustered gi|2323521672|ref|XM_051632190.1| 8895 g2139 i0 94.444 0.540540540540541 36 1 11 1 173 207 3266 3301 PREDICTED: Apus apus ankyrin repeat and fibronectin type-III domain-containing protein 1-like (LOC127390480), transcript variant X5, mRNA blastn 180 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Apodidae Apus Apus apus
18481563 18481563 PRJNA664479_S_NODE_4935_length_238_cov_3.021164_g4859_i0 PRJNA664479 4935 238 3.021164 7.19037032 Protopterus annectens 7888 Chordata Chordata 52.8 0.021   NTclustered gi|2118995790|ref|XM_044066587.1| 7888 g4859 i0 100 0.117647058823529 28 0 12 0 181 208 3472 3445 PREDICTED: Protopterus annectens F-box protein 32 (FBXO32), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
19756078 19756078 PRJNA664479_S_NODE_19036_length_161_cov_0.866071_g18960_i0 PRJNA664479 19036 161 0.866071 1.39437431 Oryctolagus cuniculus 9986 Chordata Chordata 95.3 2.19e-15   NTclustered gi|2862857285|ref|XM_002717506.5| 9986 g18960 i0 80.645 20.0745341614907 124 22 76 2 34 156 366 244 PREDICTED: Oryctolagus cuniculus small ribosomal subunit protein uS2-like (LOC100354806), mRNA blastn 3232 95.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
19756079 19756079 PRJNA664479_S_NODE_2876_length_296_cov_0.870445_g2800_i0 PRJNA664479 2876 296 0.870445 2.5765172 Melozone crissalis 40204 Chordata Chordata 176 1.56e-39   NTclustered gi|2461384232|ref|XM_054278686.1| 40204 g2800 i0 78.049 49.6351351351351 287 57 96 3 13 296 4407 4124 PREDICTED: Melozone crissalis myosin heavy chain, skeletal muscle, adult-like (LOC128938445), transcript variant X2, mRNA blastn 14692 176 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Passerellidae Melozone Melozone crissalis
19756082 19756082 PRJNA664479_S_NODE_7396_length_207_cov_0.962025_g7320_i0 PRJNA664479 7396 207 0.962025 1.99139175 Myxine glutinosa 7769 Chordata Chordata 52.8 0.018   NTclustered gi|2797651121|ref|XM_068128946.1| 7769 g7320 i0 100 0.676328502415459 28 0 14 0 7 34 2048 2021 PREDICTED: Myxine glutinosa involucrin-like (LOC137435293), transcript variant X4, mRNA blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
21031693 21031693 PRJNA664479_S_NODE_18477_length_161_cov_1.375000_g18401_i0 PRJNA664479 18477 161 1.375 2.21375 Microcaecilia unicolor 1415580 Chordata Chordata 86.1 1.32e-12   NTclustered gi|1717034663|ref|XM_030219878.1| 1415580 g18401 i0 78.462 1.77018633540373 130 28 81 0 2 131 517 388 PREDICTED: Microcaecilia unicolor calmodulin 3 (CALM3), mRNA blastn 285 86.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Siphonopidae Microcaecilia Microcaecilia unicolor
21031695 21031695 PRJNA664479_S_NODE_2837_length_297_cov_3.250000_g2761_i0 PRJNA664479 2837 297 3.25 9.6525 Mus musculus 10090 Chordata Chordata 52.8 0.028   NTclustered gi|60279846|gb|AC147513.16| 10090 g2761 i0 100 0.188552188552189 28 0 9 0 43 70 132161 132188 Mus musculus chromosome 1, clone RP23-105K16, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
21031696 21031696 PRJNA664479_S_NODE_397_length_708_cov_2.048558_g337_i0 PRJNA664479 397 708 2.048558 14.50379064 Lampetra planeri 7750 Chordata Chordata 56.5 0.005   NTclustered gi|2814988585|emb|OZ078385.2| 7750 g337 i0 89.13 0.129943502824859 46 3 6 2 308 353 6389336 6389293 Lampetra planeri genome assembly, chromosome: 62 blastn 92 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
21564255 21564255 PRJNA664479_S_NODE_5617_length_228_cov_0.664804_g5541_i0 PRJNA664479 5617 228 0.664804 1.51575312 Metazoa 33208 Chordata Chordata 58.4 4.37e-4   NTclustered gi|2487045782|ref|XM_055089889.1| 9755 g5541 i0 100 8.56578947368421 31 0 14 0 1 31 706 676 PREDICTED: Physeter macrocephalus actin, cytoplasmic 1 (LOC112063645), transcript variant X1, mRNA blastn 1953 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Physeter Physeter macrocephalus
22839682 22839682 PRJNA664479_S_NODE_12038_length_177_cov_0.742188_g11962_i0 PRJNA664479 12038 177 0.742188 1.31367276 Mammalia 40674 Chordata Chordata 145 2.4e-30   NTclustered gi|1926311222|ref|XM_037000545.1| 9974 g11962 i0 86.029 5.90395480225989 136 17 76 2 3 137 755 621 PREDICTED: Manis javanica ribosomal protein S17 (RPS17), mRNA blastn 1045 145 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis javanica
23581805 23581805 PRJNA664479_S_NODE_5359_length_231_cov_17.884615_g5283_i0 PRJNA664479 5359 231 17.884615 41.31346065 Hyla sarda 327740 Chordata Chordata 54.7 0.006   NTclustered gi|2512208616|ref|XM_056523793.1| 327740 g5283 i0 88.889 1.85714285714286 45 3 19 2 1 43 12023 11979 PREDICTED: Hyla sarda glutamate ionotropic receptor NMDA type subunit 2B (GRIN2B), transcript variant X4, mRNA blastn 429 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
24855404 24855404 PRJNA664479_S_NODE_17160_length_163_cov_0.894737_g17084_i0 PRJNA664479 17160 163 0.894737 1.45842131 Mus musculus 10090 Chordata Chordata 302 1.22e-77   NTclustered gi|74188332|dbj|AK144300.1| 10090 g17084 i0 100 90.9447852760736 163 0 100 0 1 163 2914 2752 Mus musculus 13 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:G630012F19 product:Arsenite-resistance protein 2, full insert sequence blastn 14824 302 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
25388693 25388693 PRJNA664479_S_NODE_10040_length_188_cov_0.827338_g9964_i0 PRJNA664479 10040 188 0.827338 1.55539544 Branchiostoma 7737 Chordata Chordata 110 9.43e-20   NTclustered gi|1889934490|ref|XM_035803620.1| 7739 g9964 i0 77.72 3.75531914893617 193 33 100 8 1 188 1303 1116 PREDICTED: Branchiostoma floridae elongation factor 1-alpha (LOC118404506), transcript variant X1, mRNA blastn 706 110 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
25388703 25388703 PRJNA664479_S_NODE_6780_length_213_cov_1.243902_g6704_i0 PRJNA664479 6780 213 1.243902 2.64951126 Mus 10088 Chordata Chordata 394 2.7e-105   NTclustered gi|846387786|dbj|LC061991.1| 10090 g6704 i0 100 100 213 0 100 0 1 213 1254 1042 Mus musculus mitochondrion DNA, including ATP6, COX3, tRNA-Gly, ND3, tRNA-Arg, ND4L, ND4 genes, complete sequence, sequence_id: (8070..10988)_18 blastn 21300 394 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;