RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA664479" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA664479 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8282368 8282368 PRJNA664479_S_NODE_12827_length_173_cov_1.096774_g12751_i0 PRJNA664479 12827 173 1.096774 1.89741902 Planctomyces sp. SH-PL62 1636152 Bacteria Bacteria 187 3.82e-43   NTclustered gi|1015454008|gb|CP011273.1| 1636152 g12751 i0 96.46 81.2658959537572 113 4 65 0 3 115 1155466 1155354 Planctomyces sp. SH-PL62, complete genome blastn 14059 187 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctomyces Planctomyces sp. SH-PL62
13383214 13383214 PRJNA664479_S_NODE_9791_length_189_cov_1.571429_g9715_i0 PRJNA664479 9791 189 1.571429 2.97000081 Thalassoglobus polymorphus 2527994 Bacteria Bacteria 283 5.28e-72   NTclustered gi|1712486265|gb|CP036267.1| 2527994 g9715 i0 95.028 122.444444444444 181 7 95 2 10 189 5086921 5086742 Thalassoglobus polymorphus strain Mal48 chromosome blastn 23142 283 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Thalassoglobus Thalassoglobus polymorphus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;