RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA663960" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA663960 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19755780 19755780 PRJNA663960_S_NODE_51276_length_169_cov_1.565574_g51040_i0 PRJNA663960 51276 169 1.565574 2.64582006 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 285 1.28e-72   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g51040 i0 97.041 109.680473372781 169 5 100 0 1 169 3557345 3557513 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 18536 285 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
21031416 21031416 PRJNA663960_S_NODE_59817_length_160_cov_0.902655_g59581_i0 PRJNA663960 59817 160 0.902655 1.444248 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 289 9.29e-74   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g59581 i0 99.371 111.68125 159 1 99 0 2 160 3557675 3557517 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 17869 289 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
22305993 22305993 PRJNA663960_S_NODE_27218_length_232_cov_1.929730_g26982_i0 PRJNA663960 27218 232 1.92973 4.4769736 Sedimentisphaera cyanobacteriorum 1940790 Bacteria Bacteria 52.8 0.021   NTclustered gi|1146072971|gb|CP019633.1| 1940790 g26982 i0 100 0.120689655172414 28 0 12 0 66 93 1410998 1411025 Sedimentisphaera cyanobacteriorum strain L21-RPul-D3 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Sedimentisphaerales Sedimentisphaeraceae Sedimentisphaera Sedimentisphaera cyanobacteriorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;