RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA663960" and tax_clade = "FCB group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 13 ✖

bioproject 1

  • PRJNA663960 · 13 ✖

analysis 1

  • blastn · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4456839 4456839 PRJNA663960_S_NODE_724_length_780_cov_3.557981_g480_i1 PRJNA663960 724 780 3.557981 27.7522518 Porphyromonas sp. oral taxon 275 712435 Bacteria Bacteria 1099 0   NTclustered gi|2028834772|gb|CP072333.1| 712435 g480 i1 92.327 525.576923076923 782 46 99 12 1 777 442742 443514 Porphyromonas sp. oral taxon 275 strain W7780 chromosome, complete genome blastn 409950 1099 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. oral taxon 275
4990466 4990466 PRJNA663960_S_NODE_8144_length_354_cov_3.863192_g7908_i0 PRJNA663960 8144 354 3.863192 13.67569968 Bacteroidaceae 815 Bacteria Bacteria 460 4.689999999999999e-125   NTclustered gi|2098064349|gb|CP081898.1| 818 g7908 i0 90.113 5.00847457627119 354 35 100 0 1 354 6013916 6014269 Bacteroides thetaiotaomicron strain BFG-55 chromosome, complete genome blastn 1773 460 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron
11365512 11365512 PRJNA663960_S_NODE_14609_length_297_cov_4.032000_g14373_i0 PRJNA663960 14609 297 4.032 11.97504 Capnocytophaga 1016 Bacteria Bacteria 549 8.029999999999997e-152   NTclustered gi|1844455069|gb|MT505507.1| 1019 g14373 i0 100 99.993265993266 297 0 100 0 1 297 189 485 Capnocytophaga sputigena strain KCOM 3358 (=ChDC P009-2) 16S ribosomal RNA gene, partial sequence blastn 29698 549 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sputigena
12108177 12108177 PRJNA663960_S_NODE_51190_length_169_cov_1.729508_g50954_i0 PRJNA663960 51190 169 1.729508 2.92286852 Pedobacter heparinus 984 Bacteria Bacteria 54.7 0.004   NTclustered gi|255342900|gb|CP001681.1| 485917 g50954 i0 100 0.171597633136095 29 0 17 0 99 127 93393 93421 Pedobacter heparinus DSM 2366, complete genome blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter heparinus
13382891 13382891 PRJNA663960_S_NODE_49411_length_172_cov_2.448000_g49175_i0 PRJNA663960 49411 172 2.448 4.21056 Christiangramia echinicola 279359 Bacteria Bacteria 52.8 0.014   NTclustered gi|1085804381|emb|LT629745.1| 279359 g49175 i0 100 0.162790697674419 28 0 16 0 92 119 1055053 1055026 Gramella echinicola strain Mar_2010_102 genome assembly, chromosome: I blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Christiangramia Christiangramia echinicola
17206831 17206831 PRJNA663960_S_NODE_41194_length_190_cov_1.069930_g40958_i0 PRJNA663960 41194 190 1.06993 2.032867 Sphingobacterium multivorum 28454 Bacteria Bacteria 351 1.4399999999999997e-92   NTclustered gi|1986727426|gb|CP069793.1| 28454 g40958 i0 100 439.236842105263 190 0 100 0 1 190 172019 171830 Sphingobacterium multivorum strain FDAARGOS_1203 chromosome blastn 83455 351 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium multivorum
18481125 18481125 PRJNA663960_S_NODE_35995_length_203_cov_0.980769_g35759_i0 PRJNA663960 35995 203 0.980769 1.99096107 Porphyromonas sp. oral taxon 275 712435 Bacteria Bacteria 279 7.45e-71   NTclustered gi|2028834772|gb|CP072333.1| 712435 g35759 i0 91.626 33.4039408866995 203 16 100 1 1 203 443700 443901 Porphyromonas sp. oral taxon 275 strain W7780 chromosome, complete genome blastn 6781 279 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. oral taxon 275
18481254 18481254 PRJNA663960_S_NODE_5215_length_405_cov_3.765363_g4979_i0 PRJNA663960 5215 405 3.765363 15.24972015 Porphyromonas sp. oral taxon 275 712435 Bacteria Bacteria 449 1.18e-121   NTclustered gi|2028834772|gb|CP072333.1| 712435 g4979 i0 86.732 1.00493827160494 407 50 100 3 1 405 1765715 1765311 Porphyromonas sp. oral taxon 275 strain W7780 chromosome, complete genome blastn 407 449 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. oral taxon 275
18481301 18481301 PRJNA663960_S_NODE_595_length_826_cov_3.573813_g480_i0 PRJNA663960 595 826 3.573813 29.51969538 Porphyromonas sp. oral taxon 275 712435 Bacteria Bacteria 1362 0   NTclustered gi|2028834772|gb|CP072333.1| 712435 g480 i0 96.489 434.48789346247 826 26 100 3 1 826 443564 442742 Porphyromonas sp. oral taxon 275 strain W7780 chromosome, complete genome blastn 358887 1362 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. oral taxon 275
22306097 22306097 PRJNA663960_S_NODE_4018_length_442_cov_7.324051_g3783_i0 PRJNA663960 4018 442 7.324051 32.372305420000004 Flavobacterium dauae 1563479 Bacteria Bacteria 56.5 0.003   NTclustered gi|2557430891|gb|CP130821.1| 1563479 g3783 i0 100 0.0678733031674208 30 0 7 0 287 316 1161409 1161438 Flavobacterium dauae strain TCH3-2 chromosome, complete genome blastn 30 56.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium dauae
22306260 22306260 PRJNA663960_S_NODE_8678_length_348_cov_2.983389_g8442_i0 PRJNA663960 8678 348 2.983389 10.38219372 Bacteroidales bacterium 2030927 Bacteria Bacteria 54.7 0.009   NTclustered gi|2621786220|emb|OY782678.1| 2030927 g8442 i0 100 0.0833333333333333 29 0 8 0 135 163 472981 472953 MAG: Bacteroidales bacterium isolate 1f9300ae-d6db-4a26-8fb7-1be2ee45184d genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
23581605 23581605 PRJNA663960_S_NODE_9559_length_338_cov_3.422680_g9323_i0 PRJNA663960 9559 338 3.42268 11.5686584 Porphyromonas pogonae 867595 Bacteria Bacteria 305 2.22e-78   NTclustered gi|2665661841|gb|CP143258.1| 867595 g9323 i0 83.14 409.62426035503 344 49 100 7 1 338 263845 264185 Porphyromonas pogonae strain PP01-1 chromosome, complete genome blastn 138453 305 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas pogonae
24854868 24854868 PRJNA663960_S_NODE_18640_length_272_cov_5.857778_g18404_i0 PRJNA663960 18640 272 5.857778 15.93315616 Hymenobacter sp. 5317J-9 2932250 Bacteria Bacteria 453 5.8600000000000006e-123   NTclustered gi|2221939013|gb|CP095050.1| 2932250 g18404 i0 96.691 314.511029411765 272 9 100 0 1 272 1964625 1964896 Hymenobacter sp. 5317J-9 chromosome, complete genome blastn 85547 453 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sp. 5317J-9

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;