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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA662254 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1904407 1904407 PRJNA662254_P_NODE_38902_length_269_cov_1.311224_g38251_i0 PRJNA662254 38902 269 1.311224 3.52719256 Arcella discoides 1078856 Tubulinea other_Eukaryota 287 6.21e-73   NTclustered gi|345452540|gb|JF694288.1| 1078856 g38251 i0 86.364 81.2973977695167 264 34 98 2 3 265 437 699 Arcella discoides isolate DL3_98 clone 2 actin gene, partial cds blastn 21869 287 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella discoides
1904472 1904472 PRJNA662254_P_NODE_53642_length_247_cov_0.885057_g52991_i0 PRJNA662254 53642 247 0.885057 2.18609079 Arcella hemisphaerica 497998 Tubulinea other_Eukaryota 302 2.01e-77   NTclustered gi|167859728|gb|EU273444.1| 497998 g52991 i0 90.789 60.1578947368421 228 17 91 3 22 247 1000 775 Arcella hemisphaerica alpha-tubulin gene, partial cds blastn 14859 302 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella hemisphaerica
4456109 4456109 PRJNA662254_P_NODE_1204_length_1592_cov_7.714944_g939_i2 PRJNA662254 1204 1592 7.714944 122.82190848 Copromyxa protea 931554 Tubulinea other_Eukaryota 780 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g939 i2 77.19 7.01570351758794 1381 287 85 21 26 1383 1 1376 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 11169 780 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
4990243 4990243 PRJNA662254_P_NODE_53324_length_247_cov_0.885057_g52673_i0 PRJNA662254 53324 247 0.885057 2.18609079 Leptomyxida 66524 Tubulinea other_Eukaryota 455 1.4600000000000002e-123   NTclustered gi|11527305|gb|AF293898.1|AF293898 136456 g52673 i0 100 83.7085020242915 246 0 99 0 2 247 1335 1580 Leptomyxa reticulata small subunit ribosomal RNA gene, complete sequence blastn 20676 455 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Leptomyxidae Leptomyxa Leptomyxa reticulata
7539873 7539873 PRJNA662254_P_NODE_7706_length_609_cov_10.294776_g7078_i0 PRJNA662254 7706 609 10.294776 62.69518584 Saccamoeba 136463 Tubulinea other_Eukaryota 1092 0   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g7078 i0 99.015 83.2692939244663 609 6 100 0 1 609 1784 1176 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 50711 1092 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
9556798 9556798 PRJNA662254_P_NODE_42128_length_258_cov_3.583784_g41477_i0 PRJNA662254 42128 258 3.583784 9.24616272 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 200 7.93e-47   NTclustered gi|300078497|gb|GU001159.1| 200886 g41477 i0 80.899 4.35271317829457 267 40 100 9 1 258 2540 2804 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1123 200 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
12641189 12641189 PRJNA662254_P_NODE_6490_length_670_cov_4.966499_g5877_i0 PRJNA662254 6490 670 4.966499 33.2755433 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 562 2.49e-155   NTclustered gi|33946352|gb|AY294155.1| 242547 g5877 i0 83.811 88.6402985074627 593 92 88 4 80 670 1124 534 Glaeseria mira actin mRNA, partial cds blastn 59389 566 0.992932862190813 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Glaeseria Glaeseria mira
13382443 13382443 PRJNA662254_P_NODE_56571_length_245_cov_1.360465_g55920_i0 PRJNA662254 56571 245 1.360465 3.33313925 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 119 2.15e-22   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g55920 i0 76.21 1.01224489795918 248 45 100 13 1 245 3708 3944 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 248 119 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
16464804 16464804 PRJNA662254_P_NODE_8793_length_566_cov_11.989858_g8153_i0 PRJNA662254 8793 566 11.989858 67.86259628 Saccamoeba 136463 Tubulinea other_Eukaryota 990 0   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g8153 i0 98.233 64.2932862190813 566 10 100 0 1 566 1132 567 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 36390 996 0.993975903614458 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
22305722 22305722 PRJNA662254_P_NODE_8378_length_582_cov_0.886051_g7744_i0 PRJNA662254 8378 582 0.886051 5.15681682 Ptolemeba bulliensis 1525729 Tubulinea other_Eukaryota 952 0   NTclustered gi|1255287465|dbj|LC272073.1| 1525729 g7744 i0 96.392 75.0567010309278 582 14 100 7 1 582 604 1178 Ptolemeba bulliensis gene for 18S ribosomal RNA, partial sequence, strain: BA02 blastn 43683 952 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Ptolemeba Ptolemeba bulliensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;