RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA662254 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1904555 1904555 PRJNA662254_P_NODE_65762_length_241_cov_0.916667_g65111_i0 PRJNA662254 65762 241 0.916667 2.20916747 Geomonas oryzisoli 2847992 Bacteria Bacteria 296 9.08e-76   NTclustered gi|2056214585|gb|CP076723.1| 2847992 g65111 i0 88.797 22.9834024896266 241 27 100 0 1 241 4696613 4696373 Geomonas oryzisoli strain RG10 chromosome, complete genome blastn 5539 296 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas oryzisoli
4456245 4456245 PRJNA662254_P_NODE_49324_length_249_cov_0.875000_g48673_i0 PRJNA662254 49324 249 0.875 2.17875 Citrifermentans bremense 60035 Bacteria Bacteria 298 2.62e-76   NTclustered gi|1886376207|dbj|AP023213.1| 60035 g48673 i0 88.306 79.4016064257028 248 29 99 0 2 249 3432825 3433072 Geobacter bremensis R4 DNA, complete genome blastn 19771 298 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Citrifermentans Citrifermentans bremense
10832560 10832560 PRJNA662254_P_NODE_65709_length_241_cov_0.916667_g65058_i0 PRJNA662254 65709 241 0.916667 2.20916747 Pelobacter propionicus 29543 Bacteria Bacteria 158 4.47e-34   NTclustered gi|118501159|gb|CP000482.1| 338966 g65058 i0 78.926 1.00414937759336 242 43 99 7 4 241 1897214 1896977 Pelobacter propionicus DSM 2379, complete genome blastn 242 158 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Pelobacter Pelobacter propionicus
21030839 21030839 PRJNA662254_P_NODE_44597_length_251_cov_0.865169_g43946_i0 PRJNA662254 44597 251 0.865169 2.17157419 Geobacter sp. FeAm09 2597769 Bacteria Bacteria 255 1.62e-63   NTclustered gi|1735471693|gb|CP042466.1| 2597769 g43946 i0 91.398 0.741035856573705 186 16 74 0 1 186 849801 849986 Geobacter sp. FeAm09 chromosome, complete genome blastn 186 255 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp. FeAm09

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;