RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA662254 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1904492 1904492 PRJNA662254_P_NODE_5682_length_726_cov_3.831547_g5086_i0 PRJNA662254 5682 726 3.831547 27.81703122 Philodina roseola 96448 Rotifera other_Eukaryota 848 0   NTclustered gi|37785582|gb|AY210469.1| 96448 g5086 i0 87.805 85.504132231405 738 73 100 10 1 726 1151 419 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 62076 848 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
6265707 6265707 PRJNA662254_P_NODE_14545_length_430_cov_4.364146_g13894_i0 PRJNA662254 14545 430 4.364146 18.7658278 Opisthokonta 33154 Rotifera other_Eukaryota 662 0   NTclustered gi|37785582|gb|AY210469.1| 96448 g13894 i0 94.432 99.553488372093 431 23 100 1 1 430 423 853 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 42808 667 0.992503748125937 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
8281586 8281586 PRJNA662254_P_NODE_59907_length_244_cov_0.900585_g59256_i0 PRJNA662254 59907 244 0.900585 2.1974274 Adineta vaga 104782 Rotifera other_Eukaryota 62.1 3.66e-5   NTclustered gi|345452365|gb|JN235987.1| 104782 g59256 i0 88.462 0.213114754098361 52 5 21 1 56 107 36273 36323 Adineta vaga clone 111A10 genomic sequence blastn 52 62.1 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
10832539 10832539 PRJNA662254_P_NODE_6189_length_690_cov_9.435981_g5580_i0 PRJNA662254 6189 690 9.435981 65.1082689 Philodina roseola 96448 Rotifera other_Eukaryota 1242 0   NTclustered gi|37785582|gb|AY210469.1| 96448 g5580 i0 99.13 41.5463768115942 690 6 100 0 1 690 1855 2544 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 28667 1242 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
12107646 12107646 PRJNA662254_P_NODE_41230_length_261_cov_1.882979_g40579_i0 PRJNA662254 41230 261 1.882979 4.91457519 Brachionus manjavacas 667381 Rotifera other_Eukaryota 154 6.34e-33   NTclustered gi|2006240371|gb|MW559986.1| 667381 g40579 i0 81.675 14.1072796934866 191 29 72 5 40 227 6337 6524 Brachionus manjavacas isolate AU chromosome I mitochondrion, complete sequence blastn 3682 154 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus manjavacas
14657209 14657209 PRJNA662254_P_NODE_31132_length_298_cov_0.924444_g30481_i0 PRJNA662254 31132 298 0.924444 2.75484312 Adineta vaga 104782 Rotifera other_Eukaryota 351 2.44e-92   NTclustered gi|188501695|gb|EU643494.1| 104782 g30481 i0 88.294 1.52013422818792 299 27 100 5 1 298 4707 4998 Adineta vaga clone 209H10 transposon hobo-like, retrotransposon Juno1.6, and transposon hobo-like, complete sequence; microsatellite sequence; retrotransposon Athena and transposon, complete sequence; hypothetical protein and putative lipoprotein-like protein genes, complete cds; and retrotransposon Athena, complete sequence blastn 453 351 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
14657392 14657392 PRJNA662254_P_NODE_8132_length_591_cov_1.604247_g7502_i0 PRJNA662254 8132 591 1.604247 9.48109977 Philodina citrina 468664 Rotifera other_Eukaryota 473 1.0499999999999999e-128   NTclustered gi|407227484|emb|FR856884.1| 468664 g7502 i0 81.575 20.6429780033841 597 89 100 18 1 591 1681 2262 Philodina citrina complete mitochondrial genome blastn 12200 473 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
16464730 16464730 PRJNA662254_P_NODE_1513_length_1432_cov_3.986019_g1213_i0 PRJNA662254 1513 1432 3.986019 57.07979208 Ploima 84394 Rotifera other_Eukaryota 1258 0   NTclustered gi|1802791203|gb|MN256532.1| 392764 g1213 i0 82.771 53.0013966480447 1422 233 99 11 1 1416 16 1431 Brachionus rubens chromosome II mitochondrion, complete sequence blastn 75898 1258 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
17206209 17206209 PRJNA662254_P_NODE_12394_length_467_cov_1.982234_g11743_i0 PRJNA662254 12394 467 1.982234 9.25703278 Brachionus patulus 160652 Rotifera other_Eukaryota 230 1.9499999999999994e-55   NTclustered gi|14276851|gb|AF325132.1|AF325132 160652 g11743 i0 82.143 38.5845824411135 280 38 59 10 26 300 273 1 Brachionus patulus 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 18019 230 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus patulus
21030982 21030982 PRJNA662254_P_NODE_9277_length_548_cov_2.172632_g8635_i0 PRJNA662254 9277 548 2.172632 11.90602336 Asplanchna sp. 3231738 Rotifera other_Eukaryota 350 1.71e-91   NTclustered gi|2778092479|gb|PP988071.1| 3231738 g8635 i0 78.388 18.286496350365 546 112 99 6 6 548 28 570 Asplanchna sp. chromosome I mitochondrion, complete sequence blastn 10021 350 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sp.
21563888 21563888 PRJNA662254_P_NODE_27357_length_316_cov_17.082305_g26706_i0 PRJNA662254 27357 316 17.082305 53.9800838 Metazoa 33208 Rotifera other_Eukaryota 584 2.359999999999999e-162   NTclustered gi|37785582|gb|AY210469.1| 96448 g26706 i0 100 53.4715189873418 316 0 100 0 1 316 1505 1820 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 16897 584 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
23580899 23580899 PRJNA662254_P_NODE_2439_length_1143_cov_3.749533_g2048_i0 PRJNA662254 2439 1143 3.749533 42.85716219 Brachionus falcatus 392765 Rotifera other_Eukaryota 418 9.97e-112   NTclustered gi|2615504969|gb|OR665529.1| 392765 g2048 i0 73.977 3.167104111986 1149 247 98 45 27 1143 10600 11728 Brachionus falcatus chromosome 2 mitochondrion, complete sequence blastn 3620 418 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus falcatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;