RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA662254 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
628311 628311 PRJNA662254_P_NODE_41921_length_259_cov_1.618280_g41270_i0 PRJNA662254 41921 259 1.61828 4.1913452 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 283 7.679999999999999e-72   NTclustered gi|166052031|emb|CU356341.1| 100861 g41270 i0 86.434 99.6138996138996 258 35 99 0 1 258 466 209 Aphanomyces euteiches cDNA blastn 25800 283 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
13382308 13382308 PRJNA662254_P_NODE_24571_length_333_cov_1.176923_g23920_i0 PRJNA662254 24571 333 1.176923 3.91915359 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 231 3.76e-56   NTclustered gi|166035018|emb|CU349244.1| 100861 g23920 i0 80.592 87.3153153153153 304 55 91 4 1 302 485 786 Aphanomyces euteiches cDNA blastn 29076 231 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
15931079 15931079 PRJNA662254_P_NODE_17993_length_386_cov_1.463259_g17342_i0 PRJNA662254 17993 386 1.463259 5.64817974 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 303 9.21e-78   NTclustered gi|166039230|emb|CU355280.1| 100861 g17342 i0 81.122 78.3497409326425 392 62 100 11 1 386 664 279 Aphanomyces euteiches cDNA blastn 30243 303 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
19755204 19755204 PRJNA662254_P_NODE_28696_length_310_cov_0.864979_g28045_i0 PRJNA662254 28696 310 0.864979 2.6814349 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 283 9.43e-72   NTclustered gi|673029803|ref|XM_008870641.1| 157072 g28045 i0 85.145 85.7612903225806 276 41 89 0 1 276 287 12 Aphanomyces invadans histone mRNA blastn 26586 283 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
19755272 19755272 PRJNA662254_P_NODE_50716_length_248_cov_1.045714_g50065_i0 PRJNA662254 50716 248 1.045714 2.59337072 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|669150485|ref|XM_008612583.1| 1156394 g50065 i0 100 0.120967741935484 30 0 12 0 206 235 931 960 Saprolegnia diclina VS20 hypothetical protein mRNA blastn 30 56.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
23580909 23580909 PRJNA662254_P_NODE_28759_length_309_cov_1.644068_g28108_i0 PRJNA662254 28759 309 1.644068 5.08017012 Phytophthora sp. 89336 SAR_Eukaryotes SAR_Eukaryotes 322 1.99e-83   NTclustered gi|1233049813|gb|KX251484.1| 89336 g28108 i0 85.484 96.1197411003236 310 39 98 1 1 304 777 1086 Phytophthora sp. isolate 48H2(authentic) heat shock protein 90 gene, partial cds blastn 29701 322 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp.
24854517 24854517 PRJNA662254_P_NODE_32180_length_293_cov_1.340909_g31529_i0 PRJNA662254 32180 293 1.340909 3.92886337 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 235 2.51e-57   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g31529 i0 84.979 104.242320819113 233 34 79 1 55 286 299 67 Aphanomyces astaci polyubiquitin mRNA blastn 30543 235 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;