RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA662254 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
628380 628380 PRJNA662254_P_NODE_53921_length_247_cov_0.885057_g53270_i0 PRJNA662254 53921 247 0.885057 2.18609079 Mycoplasma yeatsii 51365 Bacteria Bacteria 396 8.95e-106   NTclustered gi|756767228|gb|CP007520.1| 743967 g53270 i0 95.547 2.32388663967611 247 11 100 0 1 247 888553 888799 Mycoplasma yeatsii GM274B blastn 574 396 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma yeatsii
1904453 1904453 PRJNA662254_P_NODE_51142_length_248_cov_0.880000_g50491_i0 PRJNA662254 51142 248 0.88 2.1824 Mycoplasma yeatsii 51365 Bacteria Bacteria 398 2.5e-106   NTclustered gi|756767228|gb|CP007520.1| 743967 g50491 i0 95.565 1.78629032258065 248 11 100 0 1 248 571179 571426 Mycoplasma yeatsii GM274B blastn 443 398 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma yeatsii
8281493 8281493 PRJNA662254_P_NODE_4787_length_797_cov_10.056630_g4226_i0 PRJNA662254 4787 797 10.05663 80.1513411 Spiroplasma melliferum 2134 Bacteria Bacteria 56.5 0.006   NTclustered gi|1634056650|gb|CP029202.1| 2134 g4226 i0 92.5 0.0501882057716437 40 2 5 1 643 681 483308 483269 Spiroplasma melliferum strain AS576 chromosome, complete genome blastn 40 56.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma melliferum
9556762 9556762 PRJNA662254_P_NODE_29028_length_308_cov_0.982979_g28377_i0 PRJNA662254 29028 308 0.982979 3.02757532 Acholeplasma laidlawii 2148 Bacteria Bacteria 219 2.68e-52   NTclustered gi|2322007577|gb|CP103951.1| 2148 g28377 i0 81.387 61.4415584415584 274 45 88 6 1 271 1168117 1167847 Acholeplasma laidlawii strain JS42 chromosome, complete genome blastn 18924 219 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma laidlawii
15190449 15190449 PRJNA662254_P_NODE_20492_length_362_cov_1.581315_g19841_i0 PRJNA662254 20492 362 1.581315 5.7243603 Mycoplasma 2093 Bacteria Bacteria 664 0   NTclustered gi|2294785939|gb|CP103424.1| 51364 g19841 i0 99.724 195 362 1 100 0 1 362 269768 270129 Mycoplasma cottewii strain VIS chromosome, complete genome blastn 70590 664 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii
16464773 16464773 PRJNA662254_P_NODE_44313_length_251_cov_1.882022_g43662_i0 PRJNA662254 44313 251 1.882022 4.72387522 Mycoplasma 2093 Bacteria Bacteria 455 1.48e-123   NTclustered gi|2294977822|gb|OP364020.1| 2108 g43662 i0 99.598 169.99203187251 249 1 99 0 3 251 90 338 Mycoplasma sp. strain unknow 16S ribosomal RNA gene, partial sequence blastn 42668 455 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp.
25388367 25388367 PRJNA662254_P_NODE_23520_length_340_cov_1.153558_g22869_i0 PRJNA662254 23520 340 1.153558 3.9220972 Mesomycoplasma 2923352 Bacteria Bacteria 628 1.1699999999999999e-175   NTclustered gi|1563681465|emb|LR214949.1| 2100 g22869 i0 100 15.0117647058824 340 0 100 0 1 340 647553 647214 Mycoplasma hyorhinis strain NCTC10121 genome assembly, plasmid: 3 blastn 5104 628 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;