RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA662254 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3179263 3179263 PRJNA662254_P_NODE_57583_length_245_cov_0.895349_g56932_i0 PRJNA662254 57583 245 0.895349 2.19360505 Stephanopogon apogon 238758 Heterolobosea other_Eukaryota 233 7.36e-57   NTclustered gi|160337332|gb|EF455760.1| 238758 g56932 i0 84.082 42.734693877551 245 35 99 3 1 243 861 1103 Stephanopogon apogon alpha-tubulin (atub) gene, partial cds blastn 10470 233 1 Eukaryota Discoba   Heterolobosea     Stephanopogonidae Stephanopogon Stephanopogon apogon
10832439 10832439 PRJNA662254_P_NODE_45509_length_251_cov_0.865169_g44858_i0 PRJNA662254 45509 251 0.865169 2.17157419 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 202 2.13e-47   NTclustered gi|290991818|ref|XM_002678486.1| 5762 g44858 i0 81.275 30.8725099601594 251 45 99 2 1 250 437 686 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_60529), partial mRNA blastn 7749 202 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
18480619 18480619 PRJNA662254_P_NODE_28075_length_312_cov_3.217573_g27424_i0 PRJNA662254 28075 312 3.217573 10.03882776 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 248 3.47e-61   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g27424 i0 91.257 56.1634615384615 183 15 59 1 129 311 2921 3102 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17523 248 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
22305534 22305534 PRJNA662254_P_NODE_31638_length_295_cov_2.067568_g30987_i0 PRJNA662254 31638 295 2.067568 6.0993256 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 204 7.139999999999998e-48   NTclustered gi|2119449339|ref|XM_044698046.1| 51637 g30987 i0 79.655 12.4135593220339 290 53 97 6 3 289 287 1 Naegleria lovaniensis uncharacterized protein (C9374_008016), partial mRNA blastn 3662 204 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
23581001 23581001 PRJNA662254_P_NODE_49679_length_249_cov_0.875000_g49028_i0 PRJNA662254 49679 249 0.875 2.17875 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 78.7 3.72e-10   NTclustered gi|290996503|ref|XM_002680776.1| 5762 g49028 i0 76.744 0.931726907630522 172 20 64 14 91 249 205 369 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_64074), partial mRNA blastn 232 78.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;