RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA662254 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4456286 4456286 PRJNA662254_P_NODE_5524_length_738_cov_2.153383_g4933_i0 PRJNA662254 5524 738 2.153383 15.89196654 Dictyostelium purpureum 5786 Evosea other_Eukaryota 715 0   NTclustered gi|330802803|ref|XM_003289355.1| 5786 g4933 i0 85.863 88.6287262872629 672 95 91 0 11 682 717 46 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_72679), mRNA blastn 65408 715 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
9556747 9556747 PRJNA662254_P_NODE_25928_length_324_cov_3.059761_g25277_i0 PRJNA662254 25928 324 3.059761 9.91362564 Entamoeba histolytica 5759 Evosea other_Eukaryota 63.9 1.41e-5   NTclustered gi|415339|emb|X65163.1| 5759 g25277 i0 93.333 106.259259259259 45 0 13 2 282 324 6012 5969 E.histolytica rRNA blastn 34428 63.9 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
12107795 12107795 PRJNA662254_P_NODE_8790_length_567_cov_0.935223_g8150_i0 PRJNA662254 8790 567 0.935223 5.30271441 Heterostelium album 2086695 Evosea other_Eukaryota 405 3.73e-108   NTclustered gi|1160571292|ref|XM_020575140.1| 670386 g8150 i0 80.364 81.9541446208113 550 94 96 12 1 543 709 1251 Polysphondylium pallidum PN500 vacuolar H+-ATPase A subunit (vatA), partial mRNA blastn 46468 405 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
13915898 13915898 PRJNA662254_P_NODE_29131_length_307_cov_1.337607_g28480_i0 PRJNA662254 29131 307 1.337607 4.10645349 Dictyostelium 5782 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|3599669|dbj|AB009080.1| 44689 g28480 i0 100 0.495114006514658 30 0 10 0 194 223 2723 2694 Dictyostelium discoideum gene for TRFA, complete cds blastn 152 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
15190444 15190444 PRJNA662254_P_NODE_1772_length_1330_cov_24.992840_g1445_i0 PRJNA662254 1772 1330 24.99284 332.404772 Entamoeba 5758 Evosea other_Eukaryota 856 0   NTclustered gi|511083902|dbj|AK419160.1| 5759 g1445 i0 80.694 84.4894736842105 1124 197 84 18 149 1262 1142 29 Entamoeba histolytica cDNA clone: Xeh-003B20, actin, complete cds, strain: HM-1:IMSS blastn 112371 856 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
15931092 15931092 PRJNA662254_P_NODE_2093_length_1231_cov_3.887737_g1733_i0 PRJNA662254 2093 1231 3.887737 47.85804247 Entamoeba histolytica 5759 Evosea other_Eukaryota 680 0   NTclustered gi|511087819|dbj|AK421189.1| 5759 g1733 i0 78.336 63.4646628757108 1094 207 88 24 117 1198 1091 16 Entamoeba histolytica cDNA clone: Xeh-012A11, elongation factor 1-alpha 1, complete cds, strain: HM-1:IMSS blastn 78125 680 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
16464748 16464748 PRJNA662254_P_NODE_28393_length_311_cov_1.214286_g27742_i0 PRJNA662254 28393 311 1.214286 3.77642946 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 263 1.23e-65   NTclustered gi|300078500|gb|GU001162.1| 136499 g27742 i0 82.019 98.2154340836013 317 49 100 7 1 311 3398 3084 Phalansterium solitarium 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 30545 263 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium solitarium
24854614 24854614 PRJNA662254_P_NODE_50500_length_248_cov_1.800000_g49849_i0 PRJNA662254 50500 248 1.8 4.464 Heterostelium album 2086695 Evosea other_Eukaryota 246 9.59e-61   NTclustered gi|1160574980|ref|XM_020581849.1| 670386 g49849 i0 85.593 96.8225806451613 236 33 95 1 10 245 805 571 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 24012 246 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;