RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA662254 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1904369 1904369 PRJNA662254_P_NODE_25062_length_330_cov_1.116732_g24411_i0 PRJNA662254 25062 330 1.116732 3.6852156 Dimastigella trypaniformis 35226 Euglenozoa other_Eukaryota 263 1.32e-65   NTclustered gi|25986820|gb|AY122624.1| 35226 g24411 i0 81.595 90.9909090909091 326 53 98 6 3 326 1042 722 Dimastigella trypaniformis strain Ulm heat shock protein 90 (HSP-90) gene, partial cds blastn 30027 263 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Dimastigella Dimastigella trypaniformis
1904409 1904409 PRJNA662254_P_NODE_40342_length_264_cov_1.596859_g39691_i0 PRJNA662254 40342 264 1.596859 4.21570776 Crithidia dedva 1134496 Euglenozoa other_Eukaryota 296 1.01e-75   NTclustered gi|1002342152|gb|KT944302.1| 1134496 g39691 i0 92.718 119.420454545455 206 14 78 1 1 205 1465 1670 Crithidia dedva strain D2 28S ribosomal RNA gene, partial sequence blastn 31527 296 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia dedva
2437114 2437114 PRJNA662254_P_NODE_30362_length_301_cov_1.350877_g29711_i0 PRJNA662254 30362 301 1.350877 4.06613977 Leishmania 5658 Euglenozoa other_Eukaryota 189 2.05e-43   NTclustered gi|577832|gb|U16999.1|LMU16999 5664 g29711 i0 84 24.6744186046512 200 28 66 4 104 301 468 271 Leishmania major ribosomal protein (L-11) gene, complete cds blastn 7427 189 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania major
2437166 2437166 PRJNA662254_P_NODE_7402_length_623_cov_2.285455_g6776_i0 PRJNA662254 7402 623 2.285455 14.23838465 Entosiphon 101492 Euglenozoa other_Eukaryota 710 0   NTclustered gi|41400272|gb|AY425008.1| 259048 g6776 i0 87.48 27.3515248796148 623 69 99 9 3 619 642 23 Entosiphon sp. TCS-2003 18S ribosomal RNA gene, partial sequence blastn 17040 710 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sp. TCS 2003
16464735 16464735 PRJNA662254_P_NODE_16913_length_398_cov_2.544615_g16262_i0 PRJNA662254 16913 398 2.544615 10.1275677 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 152 3.6499999999999997e-32   NTclustered gi|2414483|emb|Y00055.1| 5656 g16262 i0 87.692 45.5502512562814 130 16 33 0 228 357 8075 8204 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 18129 152 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata
17206468 17206468 PRJNA662254_P_NODE_8734_length_569_cov_1.129032_g8094_i0 PRJNA662254 8734 569 1.129032 6.42419208 Cryptobia helicis 62686 Euglenozoa other_Eukaryota 346 2.3e-90   NTclustered gi|55824403|gb|AY651255.1| 62686 g8094 i0 80.303 85.7170474516696 462 87 81 4 110 569 1416 957 Cryptobia helicis heat shock protein 70 cytosolic isoform gene, partial cds blastn 48773 346 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Parabodonida   Cryptobia Cryptobia helicis
19013520 19013520 PRJNA662254_P_NODE_48215_length_250_cov_0.870056_g47564_i0 PRJNA662254 48215 250 0.870056 2.17514 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 305 1.57e-78   NTclustered gi|2593250474|emb|OY748421.1| 5660 g47564 i0 94.089 127.396 203 9 80 3 1 201 989823 990024 Leishmania braziliensis isolate MHOM/BR/75/M2904 genome assembly, chromosome: 27 blastn 31849 307 0.993485342019544 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
21030811 21030811 PRJNA662254_P_NODE_36957_length_276_cov_1.137931_g36306_i0 PRJNA662254 36957 276 1.137931 3.14068956 Trypanosoma congolense 5692 Euglenozoa other_Eukaryota 52.8 0.025   NTclustered gi|342181295|emb|HE575319.1| 1068625 g36306 i0 100 0.101449275362319 28 0 10 0 80 107 1222033 1222060 Trypanosoma congolense IL3000 annotated genomic contig, chromosome 6 blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma congolense
22305619 22305619 PRJNA662254_P_NODE_50258_length_249_cov_0.875000_g49607_i0 PRJNA662254 50258 249 0.875 2.17875 Neobodo saliens 351712 Euglenozoa other_Eukaryota 215 2.72e-51   NTclustered gi|226347454|gb|FJ807267.1| 351712 g49607 i0 82.661 10.5301204819277 248 38 98 5 6 249 433 187 Neobodo saliens strain ATCC 50358 elongation factor 1 alpha-like protein gene, partial cds blastn 2622 215 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo saliens
24854564 24854564 PRJNA662254_P_NODE_42860_length_256_cov_1.459016_g42209_i0 PRJNA662254 42860 256 1.459016 3.73508096 Petalomonas cantuscygni 56452 Euglenozoa other_Eukaryota 180 1.02e-40   NTclustered gi|110589648|gb|DQ683346.1| 56452 g42209 i0 80.4 1.67578125 250 37 95 8 13 256 1901 1658 Petalomonas cantuscygni Hsp90 gene, partial cds blastn 429 180 1 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida Scytomonadidae Petalomonas Petalomonas cantuscygni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;