RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA662254 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
628453 628453 PRJNA662254_P_NODE_65481_length_241_cov_0.916667_g64830_i0 PRJNA662254 65481 241 0.916667 2.20916747 Patiria miniata 46514 Echinodermata other_Eukaryota 52.8 0.022   NTclustered gi|1944825598|ref|XM_038205112.1| 46514 g64830 i0 100 0.348547717842324 28 0 12 0 202 229 765 792 PREDICTED: Patiria miniata uncharacterized LOC119731832 (LOC119731832), mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
18480647 18480647 PRJNA662254_P_NODE_3755_length_911_cov_6.406921_g3242_i0 PRJNA662254 3755 911 6.406921 58.36705031 Acanthaster planci 133434 Echinodermata other_Eukaryota 361 1.35e-94   NTclustered gi|1229126891|ref|XM_022246344.1| 133434 g3242 i0 82.801 43.8660812294182 407 67 45 3 105 510 78 482 PREDICTED: Acanthaster planci 40S ribosomal protein S14a (LOC110985294), transcript variant X2, mRNA blastn 39962 361 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci
22305591 22305591 PRJNA662254_P_NODE_45538_length_251_cov_0.865169_g44887_i0 PRJNA662254 45538 251 0.865169 2.17157419 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 183 7.73e-42   NTclustered gi|1752399365|ref|XM_011667624.2| 7668 g44887 i0 83.59 88.8964143426295 195 32 78 0 35 229 583 389 PREDICTED: Strongylocentrotus purpuratus ATP synthase F(0) complex subunit C2, mitochondrial (LOC583818), mRNA blastn 22313 183 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
22305609 22305609 PRJNA662254_P_NODE_4818_length_794_cov_4.235784_g4256_i0 PRJNA662254 4818 794 4.235784 33.63212496 Patiria miniata 46514 Echinodermata other_Eukaryota 86.1 7.86e-12   NTclustered gi|1944940298|ref|XM_038190411.1| 46514 g4256 i0 93.103 0.853904282115869 58 4 12 0 96 153 4793 4850 PREDICTED: Patiria miniata nucleolar protein dao-5-like (LOC119720640), transcript variant X5, mRNA blastn 678 86.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;