RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA662254 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
628217 628217 PRJNA662254_P_NODE_12161_length_472_cov_8.298246_g11510_i0 PRJNA662254 12161 472 8.298246 39.16772112 Pellita digitata 1485084 Discosea other_Eukaryota 300 1.48e-76   NTclustered gi|608606230|gb|KF705037.1| 1485084 g11510 i0 82.025 38.4300847457627 395 31 78 19 94 459 886 1269 Pellita digitata clone 2 18S ribosomal RNA gene, partial sequence blastn 18139 300 1 Eukaryota Amoebozoa   Discosea Flabellinia   Pellitidae Pellita Pellita digitata
3179089 3179089 PRJNA662254_P_NODE_14263_length_435_cov_1.643646_g13612_i0 PRJNA662254 14263 435 1.643646 7.1498601 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.012   NTclustered gi|470426339|ref|XM_004337838.1| 1257118 g13612 i0 96.97 0.0758620689655172 33 0 8 1 199 231 1027 1058 Acanthamoeba castellanii str. Neff Fbox domain containing protein (ACA1_187900), partial mRNA blastn 33 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4456148 4456148 PRJNA662254_P_NODE_23024_length_343_cov_1.677778_g22373_i0 PRJNA662254 23024 343 1.677778 5.75477854 Vannella miroides 218656 Discosea other_Eukaryota 612 1.19e-170   NTclustered gi|27803574|gb|AY183888.1| 218656 g22373 i0 98.834 96.8309037900875 343 4 100 0 1 343 1588 1930 Vannella miroides small subunit ribosomal RNA gene, complete sequence blastn 33213 612 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella miroides
4456303 4456303 PRJNA662254_P_NODE_5884_length_710_cov_6.565149_g5282_i0 PRJNA662254 5884 710 6.565149 46.6125579 Vannella croatica 1778588 Discosea other_Eukaryota 1293 0   NTclustered gi|973761167|gb|KT345693.1| 1778588 g5282 i0 99.577 82.9605633802817 710 1 99 2 2 710 1235 527 Vannella croatica isolate KRKA 29.9.7.6.1 small subunit ribosomal RNA gene, partial sequence blastn 58902 1293 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella croatica
7006864 7006864 PRJNA662254_P_NODE_2506_length_1124_cov_8.314938_g2111_i0 PRJNA662254 2506 1124 8.314938 93.45990312 Platyamoeba placida 3454475 Discosea other_Eukaryota 1454 0   NTclustered gi|33946348|gb|AY294153.1| 197527 g2111 i0 90.537 97.9804270462633 1099 104 98 0 26 1124 1182 84 Platyamoeba placida actin mRNA, partial cds blastn 110130 1454 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
8281631 8281631 PRJNA662254_P_NODE_6887_length_648_cov_7.424348_g6268_i0 PRJNA662254 6887 648 7.424348 48.10977504 Vannella persistens 303303 Discosea other_Eukaryota 1151 0   NTclustered gi|165968548|gb|EU377588.1| 303303 g6268 i0 98.764 81.858024691358 647 8 99 0 2 648 716 70 Vannella persistens strain CRIB69 18S ribosomal RNA gene, partial sequence blastn 53044 1151 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella persistens
23580860 23580860 PRJNA662254_P_NODE_11819_length_479_cov_3.921182_g11168_i0 PRJNA662254 11819 479 3.921182 18.78246178 Vannella miroides 218656 Discosea other_Eukaryota 874 0   NTclustered gi|27803574|gb|AY183888.1| 218656 g11168 i0 99.582 95.7286012526096 479 2 100 0 1 479 102 580 Vannella miroides small subunit ribosomal RNA gene, complete sequence blastn 45854 874 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella miroides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;