RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA662254 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
628209 628209 PRJNA662254_P_NODE_10661_length_508_cov_0.885057_g10012_i0 PRJNA662254 10661 508 0.885057 4.49608956 Polychytrium aggregatum 110093 Fungi Fungi 52.8 0.05   NTclustered gi|2432148098|ref|XM_053111093.1| 110093 g10012 i0 100 0.0551181102362205 28 0 6 0 430 457 500 473 Polychytrium aggregatum uncharacterized protein (BJ171DRAFT_505944), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
15931088 15931088 PRJNA662254_P_NODE_20153_length_365_cov_1.547945_g19502_i0 PRJNA662254 20153 365 1.547945 5.64999925 Synchytrium microbalum 1806994 Fungi Fungi 200 1.1699999999999999e-46   NTclustered gi|1759143555|ref|XM_031167200.1| 1806994 g19502 i0 82.051 49.9452054794521 234 42 64 0 111 344 96 329 Synchytrium microbalum uncharacterized protein (SmJEL517_g01272), partial mRNA blastn 18230 200 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
21030792 21030792 PRJNA662254_P_NODE_30837_length_299_cov_1.340708_g30186_i0 PRJNA662254 30837 299 1.340708 4.00871692 Synchytrium microbalum 1806994 Fungi Fungi 183 9.449999999999998e-42   NTclustered gi|1759141962|ref|XM_031166298.1| 1806994 g30186 i0 78.073 20.6020066889632 301 58 99 8 3 299 1335 1039 Synchytrium microbalum H+-transporting two-sector ATPase (SMI368), partial mRNA blastn 6160 183 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;