RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA662254 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4456205 4456205 PRJNA662254_P_NODE_44064_length_252_cov_1.597765_g43413_i0 PRJNA662254 44064 252 1.597765 4.0263678 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 71.3 6.31e-8   NTclustered gi|2621704692|emb|OY762063.1| 2026734 g43413 i0 95.455 180.972222222222 44 2 22 0 84 127 1062964 1063007 MAG: Dehalococcoidia bacterium isolate 5405c63e-44e1-4988-9b68-fe709a885d54 genome assembly, chromosome: 1 blastn 45605 71.3 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
4456345 4456345 PRJNA662254_P_NODE_65244_length_241_cov_0.916667_g64593_i0 PRJNA662254 65244 241 0.916667 2.20916747 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 73.1 1.67e-8   NTclustered gi|2874253835|emb|OY969885.1| 1672391 g64593 i0 88.333 0.369294605809129 60 7 25 0 17 76 1217220 1217279 MAG: uncultured Chloroflexia bacterium isolate MFD01275.bin.c.5 genome assembly, chromosome: 1 blastn 89 73.1 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
15931271 15931271 PRJNA662254_P_NODE_59313_length_244_cov_0.900585_g58662_i0 PRJNA662254 59313 244 0.900585 2.1974274 Chloroflexota bacterium 2026724 Bacteria Bacteria 224 4.4099999999999997e-54   NTclustered gi|2621702192|emb|OY760183.1| 2026724 g58662 i0 83.402 1.96311475409836 241 40 99 0 1 241 406938 407178 MAG: Chloroflexota bacterium isolate 1e5240b1-722b-4dd6-bc08-6f4f73fd4587 genome assembly, chromosome: 1 blastn 479 224 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
18480803 18480803 PRJNA662254_P_NODE_65715_length_241_cov_0.916667_g65064_i0 PRJNA662254 65715 241 0.916667 2.20916747 Tepidiformaceae bacterium 3022862 Bacteria Bacteria 110 1.27e-19   NTclustered gi|2531948656|emb|OY282446.1| 3022862 g65064 i0 82.812 8.73029045643153 128 17 52 5 1 126 1378899 1379023 MAG: Tepidiformaceae bacterium genome assembly, chromosome: 1 blastn 2104 110 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae   Tepidiformaceae bacterium
21030930 21030930 PRJNA662254_P_NODE_59397_length_244_cov_0.900585_g58746_i0 PRJNA662254 59397 244 0.900585 2.1974274 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 126 1.28e-24   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g58746 i0 78.325 0.831967213114754 203 38 82 6 12 211 10247569 10247768 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 203 126 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
24854601 24854601 PRJNA662254_P_NODE_48940_length_249_cov_0.875000_g48289_i0 PRJNA662254 48940 249 0.875 2.17875 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 196 9.84e-46   NTclustered gi|2874254132|emb|OY970217.1| 1672391 g48289 i0 81.2 2 250 41 99 6 3 249 2844471 2844717 MAG: uncultured Chloroflexia bacterium isolate MFD05684.bin.1.130 genome assembly, chromosome: 1 blastn 498 196 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;