RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 5 ✖

bioproject 1

  • PRJNA662254 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2437158 2437158 PRJNA662254_P_NODE_63842_length_242_cov_0.911243_g63191_i0 PRJNA662254 63842 242 0.911243 2.20520806 root 1 Root_unresolved Root_unresolved 99 2.76e-16   NTclustered gi|2006064443|gb|CP071462.1| 2816475 g63191 i0 86.022 5.49586776859504 93 11 38 2 19 110 1306577 1306486 Haloterrigena alkaliphila strain KZCA68 chromosome, complete genome blastn 1330 99 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Haloterrigena Haloterrigena alkaliphila
4456249 4456249 PRJNA662254_P_NODE_49424_length_249_cov_0.875000_g48773_i0 PRJNA662254 49424 249 0.875 2.17875 uncultured Methanobacteriaceae archaeon 176233 Archaea Archaea 398 2.51e-106   NTclustered gi|2874253877|emb|OY969932.1| 176233 g48773 i0 95.565 2.69879518072289 248 11 99 0 1 248 588165 588412 MAG: uncultured Methanobacteriaceae archaeon isolate MFD09286.bin.c.5 genome assembly, chromosome: 1 blastn 672 398 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
14657180 14657180 PRJNA662254_P_NODE_20792_length_360_cov_1.073171_g20141_i0 PRJNA662254 20792 360 1.073171 3.8634156 uncultured Methanobacteriaceae archaeon 176233 Archaea Archaea 555 2.1299999999999994e-153   NTclustered gi|2874253877|emb|OY969932.1| 176233 g20141 i0 94.444 1 360 20 100 0 1 360 902531 902172 MAG: uncultured Methanobacteriaceae archaeon isolate MFD09286.bin.c.5 genome assembly, chromosome: 1 blastn 360 555 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
15190509 15190509 PRJNA662254_P_NODE_53132_length_247_cov_0.885057_g52481_i0 PRJNA662254 53132 247 0.885057 2.18609079 Halorubrum 56688 Archaea Archaea 54.7 0.006   NTclustered gi|1861358827|gb|CP054585.1| 1853699 g52481 i0 100 0.700404858299595 29 0 12 0 141 169 1968068 1968040 Halorubrum sp. CBA1229 chromosome, complete genome blastn 173 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. CBA1229
23580997 23580997 PRJNA662254_P_NODE_49539_length_249_cov_0.875000_g48888_i0 PRJNA662254 49539 249 0.875 2.17875 Natrinema sp. 74 3384159 Archaea Archaea 54.7 0.006   NTclustered gi|2869714891|gb|CP175698.1| 3384159 g48888 i0 100 0.116465863453815 29 0 12 0 139 167 2650949 2650977 Natrinema sp. 74 chromosome, complete genome blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema sp. 74

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;