RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_clade = "Haptista"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA662254 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7006820 7006820 PRJNA662254_P_NODE_13406_length_449_cov_1.228723_g12755_i0 PRJNA662254 13406 449 1.228723 5.51696627 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 244 6.68e-60   NTclustered gi|551615762|ref|XM_005788689.1| 280463 g12755 i0 81.544 55.3630289532294 298 53 66 2 18 314 794 498 Emiliania huxleyi CCMP1516 putative histone H2B mRNA blastn 24858 244 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
10090518 10090518 PRJNA662254_P_NODE_31168_length_297_cov_2.352679_g30517_i0 PRJNA662254 31168 297 2.352679 6.98745663 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 189 2.02e-43   NTclustered gi|61187370|gb|AY752991.1| 299901 g30517 i0 94.355 43.7542087542088 124 6 42 1 58 181 1977 2099 Sphaerastrum fockii 28S ribosomal RNA gene, partial sequence blastn 12995 189 1 Eukaryota Haptista     Centroplasthelida Pterocystida Heterophryidae Sphaerastrum Sphaerastrum fockii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;