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contig_metadata

27 rows where analysis = "blastn", bioproject = "PRJNA662254" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 27 ✖

bioproject 1

  • PRJNA662254 · 27 ✖

analysis 1

  • blastn · 27 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
628217 628217 PRJNA662254_P_NODE_12161_length_472_cov_8.298246_g11510_i0 PRJNA662254 12161 472 8.298246 39.16772112 Pellita digitata 1485084 Discosea other_Eukaryota 300 1.48e-76   NTclustered gi|608606230|gb|KF705037.1| 1485084 g11510 i0 82.025 38.4300847457627 395 31 78 19 94 459 886 1269 Pellita digitata clone 2 18S ribosomal RNA gene, partial sequence blastn 18139 300 1 Eukaryota Amoebozoa   Discosea Flabellinia   Pellitidae Pellita Pellita digitata
1904407 1904407 PRJNA662254_P_NODE_38902_length_269_cov_1.311224_g38251_i0 PRJNA662254 38902 269 1.311224 3.52719256 Arcella discoides 1078856 Tubulinea other_Eukaryota 287 6.21e-73   NTclustered gi|345452540|gb|JF694288.1| 1078856 g38251 i0 86.364 81.2973977695167 264 34 98 2 3 265 437 699 Arcella discoides isolate DL3_98 clone 2 actin gene, partial cds blastn 21869 287 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella discoides
1904472 1904472 PRJNA662254_P_NODE_53642_length_247_cov_0.885057_g52991_i0 PRJNA662254 53642 247 0.885057 2.18609079 Arcella hemisphaerica 497998 Tubulinea other_Eukaryota 302 2.01e-77   NTclustered gi|167859728|gb|EU273444.1| 497998 g52991 i0 90.789 60.1578947368421 228 17 91 3 22 247 1000 775 Arcella hemisphaerica alpha-tubulin gene, partial cds blastn 14859 302 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella hemisphaerica
3179089 3179089 PRJNA662254_P_NODE_14263_length_435_cov_1.643646_g13612_i0 PRJNA662254 14263 435 1.643646 7.1498601 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.012   NTclustered gi|470426339|ref|XM_004337838.1| 1257118 g13612 i0 96.97 0.0758620689655172 33 0 8 1 199 231 1027 1058 Acanthamoeba castellanii str. Neff Fbox domain containing protein (ACA1_187900), partial mRNA blastn 33 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4456109 4456109 PRJNA662254_P_NODE_1204_length_1592_cov_7.714944_g939_i2 PRJNA662254 1204 1592 7.714944 122.82190848 Copromyxa protea 931554 Tubulinea other_Eukaryota 780 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g939 i2 77.19 7.01570351758794 1381 287 85 21 26 1383 1 1376 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 11169 780 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
4456148 4456148 PRJNA662254_P_NODE_23024_length_343_cov_1.677778_g22373_i0 PRJNA662254 23024 343 1.677778 5.75477854 Vannella miroides 218656 Discosea other_Eukaryota 612 1.19e-170   NTclustered gi|27803574|gb|AY183888.1| 218656 g22373 i0 98.834 96.8309037900875 343 4 100 0 1 343 1588 1930 Vannella miroides small subunit ribosomal RNA gene, complete sequence blastn 33213 612 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella miroides
4456286 4456286 PRJNA662254_P_NODE_5524_length_738_cov_2.153383_g4933_i0 PRJNA662254 5524 738 2.153383 15.89196654 Dictyostelium purpureum 5786 Evosea other_Eukaryota 715 0   NTclustered gi|330802803|ref|XM_003289355.1| 5786 g4933 i0 85.863 88.6287262872629 672 95 91 0 11 682 717 46 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_72679), mRNA blastn 65408 715 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
4456303 4456303 PRJNA662254_P_NODE_5884_length_710_cov_6.565149_g5282_i0 PRJNA662254 5884 710 6.565149 46.6125579 Vannella croatica 1778588 Discosea other_Eukaryota 1293 0   NTclustered gi|973761167|gb|KT345693.1| 1778588 g5282 i0 99.577 82.9605633802817 710 1 99 2 2 710 1235 527 Vannella croatica isolate KRKA 29.9.7.6.1 small subunit ribosomal RNA gene, partial sequence blastn 58902 1293 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella croatica
4990243 4990243 PRJNA662254_P_NODE_53324_length_247_cov_0.885057_g52673_i0 PRJNA662254 53324 247 0.885057 2.18609079 Leptomyxida 66524 Tubulinea other_Eukaryota 455 1.4600000000000002e-123   NTclustered gi|11527305|gb|AF293898.1|AF293898 136456 g52673 i0 100 83.7085020242915 246 0 99 0 2 247 1335 1580 Leptomyxa reticulata small subunit ribosomal RNA gene, complete sequence blastn 20676 455 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Leptomyxidae Leptomyxa Leptomyxa reticulata
7006864 7006864 PRJNA662254_P_NODE_2506_length_1124_cov_8.314938_g2111_i0 PRJNA662254 2506 1124 8.314938 93.45990312 Platyamoeba placida 3454475 Discosea other_Eukaryota 1454 0   NTclustered gi|33946348|gb|AY294153.1| 197527 g2111 i0 90.537 97.9804270462633 1099 104 98 0 26 1124 1182 84 Platyamoeba placida actin mRNA, partial cds blastn 110130 1454 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
7539873 7539873 PRJNA662254_P_NODE_7706_length_609_cov_10.294776_g7078_i0 PRJNA662254 7706 609 10.294776 62.69518584 Saccamoeba 136463 Tubulinea other_Eukaryota 1092 0   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g7078 i0 99.015 83.2692939244663 609 6 100 0 1 609 1784 1176 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 50711 1092 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
8281631 8281631 PRJNA662254_P_NODE_6887_length_648_cov_7.424348_g6268_i0 PRJNA662254 6887 648 7.424348 48.10977504 Vannella persistens 303303 Discosea other_Eukaryota 1151 0   NTclustered gi|165968548|gb|EU377588.1| 303303 g6268 i0 98.764 81.858024691358 647 8 99 0 2 648 716 70 Vannella persistens strain CRIB69 18S ribosomal RNA gene, partial sequence blastn 53044 1151 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella persistens
9556725 9556725 PRJNA662254_P_NODE_18548_length_380_cov_1.563518_g17897_i0 PRJNA662254 18548 380 1.563518 5.9413684 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 664 0   NTclustered gi|365928255|gb|JN825705.1| 590481 g17897 i0 98.413 57.2078947368421 378 4 99 2 1 378 1005 630 Uncultured Amoebozoa clone Alchichica_AQ2b_5E_39 small subunit ribosomal RNA gene, partial sequence blastn 21739 664 1 Eukaryota Amoebozoa             uncultured Amoebozoa
9556747 9556747 PRJNA662254_P_NODE_25928_length_324_cov_3.059761_g25277_i0 PRJNA662254 25928 324 3.059761 9.91362564 Entamoeba histolytica 5759 Evosea other_Eukaryota 63.9 1.41e-5   NTclustered gi|415339|emb|X65163.1| 5759 g25277 i0 93.333 106.259259259259 45 0 13 2 282 324 6012 5969 E.histolytica rRNA blastn 34428 63.9 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
9556798 9556798 PRJNA662254_P_NODE_42128_length_258_cov_3.583784_g41477_i0 PRJNA662254 42128 258 3.583784 9.24616272 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 200 7.93e-47   NTclustered gi|300078497|gb|GU001159.1| 200886 g41477 i0 80.899 4.35271317829457 267 40 100 9 1 258 2540 2804 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1123 200 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
12107795 12107795 PRJNA662254_P_NODE_8790_length_567_cov_0.935223_g8150_i0 PRJNA662254 8790 567 0.935223 5.30271441 Heterostelium album 2086695 Evosea other_Eukaryota 405 3.73e-108   NTclustered gi|1160571292|ref|XM_020575140.1| 670386 g8150 i0 80.364 81.9541446208113 550 94 96 12 1 543 709 1251 Polysphondylium pallidum PN500 vacuolar H+-ATPase A subunit (vatA), partial mRNA blastn 46468 405 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
12641189 12641189 PRJNA662254_P_NODE_6490_length_670_cov_4.966499_g5877_i0 PRJNA662254 6490 670 4.966499 33.2755433 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 562 2.49e-155   NTclustered gi|33946352|gb|AY294155.1| 242547 g5877 i0 83.811 88.6402985074627 593 92 88 4 80 670 1124 534 Glaeseria mira actin mRNA, partial cds blastn 59389 566 0.992932862190813 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Glaeseria Glaeseria mira
13382443 13382443 PRJNA662254_P_NODE_56571_length_245_cov_1.360465_g55920_i0 PRJNA662254 56571 245 1.360465 3.33313925 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 119 2.15e-22   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g55920 i0 76.21 1.01224489795918 248 45 100 13 1 245 3708 3944 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 248 119 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
13915898 13915898 PRJNA662254_P_NODE_29131_length_307_cov_1.337607_g28480_i0 PRJNA662254 29131 307 1.337607 4.10645349 Dictyostelium 5782 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|3599669|dbj|AB009080.1| 44689 g28480 i0 100 0.495114006514658 30 0 10 0 194 223 2723 2694 Dictyostelium discoideum gene for TRFA, complete cds blastn 152 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
13915954 13915954 PRJNA662254_P_NODE_8191_length_588_cov_8.291262_g7561_i0 PRJNA662254 8191 588 8.291262 48.75262056 Vexillifera 218659 Root_unresolved Root_unresolved 431 6.39e-116   NTclustered gi|221185864|gb|FJ577811.1| 590481 g7561 i0 82.692 30.3452380952381 520 57 86 23 84 588 1837 1336 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 17843 431 1 Eukaryota Amoebozoa             uncultured Amoebozoa
15190444 15190444 PRJNA662254_P_NODE_1772_length_1330_cov_24.992840_g1445_i0 PRJNA662254 1772 1330 24.99284 332.404772 Entamoeba 5758 Evosea other_Eukaryota 856 0   NTclustered gi|511083902|dbj|AK419160.1| 5759 g1445 i0 80.694 84.4894736842105 1124 197 84 18 149 1262 1142 29 Entamoeba histolytica cDNA clone: Xeh-003B20, actin, complete cds, strain: HM-1:IMSS blastn 112371 856 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
15931092 15931092 PRJNA662254_P_NODE_2093_length_1231_cov_3.887737_g1733_i0 PRJNA662254 2093 1231 3.887737 47.85804247 Entamoeba histolytica 5759 Evosea other_Eukaryota 680 0   NTclustered gi|511087819|dbj|AK421189.1| 5759 g1733 i0 78.336 63.4646628757108 1094 207 88 24 117 1198 1091 16 Entamoeba histolytica cDNA clone: Xeh-012A11, elongation factor 1-alpha 1, complete cds, strain: HM-1:IMSS blastn 78125 680 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
16464748 16464748 PRJNA662254_P_NODE_28393_length_311_cov_1.214286_g27742_i0 PRJNA662254 28393 311 1.214286 3.77642946 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 263 1.23e-65   NTclustered gi|300078500|gb|GU001162.1| 136499 g27742 i0 82.019 98.2154340836013 317 49 100 7 1 311 3398 3084 Phalansterium solitarium 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 30545 263 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium solitarium
16464804 16464804 PRJNA662254_P_NODE_8793_length_566_cov_11.989858_g8153_i0 PRJNA662254 8793 566 11.989858 67.86259628 Saccamoeba 136463 Tubulinea other_Eukaryota 990 0   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g8153 i0 98.233 64.2932862190813 566 10 100 0 1 566 1132 567 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 36390 996 0.993975903614458 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
22305722 22305722 PRJNA662254_P_NODE_8378_length_582_cov_0.886051_g7744_i0 PRJNA662254 8378 582 0.886051 5.15681682 Ptolemeba bulliensis 1525729 Tubulinea other_Eukaryota 952 0   NTclustered gi|1255287465|dbj|LC272073.1| 1525729 g7744 i0 96.392 75.0567010309278 582 14 100 7 1 582 604 1178 Ptolemeba bulliensis gene for 18S ribosomal RNA, partial sequence, strain: BA02 blastn 43683 952 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Ptolemeba Ptolemeba bulliensis
23580860 23580860 PRJNA662254_P_NODE_11819_length_479_cov_3.921182_g11168_i0 PRJNA662254 11819 479 3.921182 18.78246178 Vannella miroides 218656 Discosea other_Eukaryota 874 0   NTclustered gi|27803574|gb|AY183888.1| 218656 g11168 i0 99.582 95.7286012526096 479 2 100 0 1 479 102 580 Vannella miroides small subunit ribosomal RNA gene, complete sequence blastn 45854 874 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella miroides
24854614 24854614 PRJNA662254_P_NODE_50500_length_248_cov_1.800000_g49849_i0 PRJNA662254 50500 248 1.8 4.464 Heterostelium album 2086695 Evosea other_Eukaryota 246 9.59e-61   NTclustered gi|1160574980|ref|XM_020581849.1| 670386 g49849 i0 85.593 96.8225806451613 236 33 95 1 10 245 805 571 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 24012 246 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;