RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA661142" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA661142 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7006752 7006752 PRJNA661142_P_NODE_6046_length_313_cov_1.799242_g5981_i0 PRJNA661142 6046 313 1.799242 5.63162746 Polyangium aurulentum 2567896 Bacteria Bacteria 78.7 4.83e-10   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g5981 i0 86.301 3.12140575079872 73 9 23 1 227 298 1400899 1400827 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 977 78.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
10832246 10832246 PRJNA661142_P_NODE_11869_length_165_cov_0.879310_g11804_i0 PRJNA661142 11869 165 0.87931 1.4508615 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 152 1.3199999999999998e-32   NTclustered gi|2108133206|gb|CP070843.1| 2026735 g11804 i0 90.598 52.4787878787879 117 7 70 4 28 143 3343937 3344050 MAG: Deltaproteobacteria bacterium isolate bin435 chromosome blastn 8659 152 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;