RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA661142" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA661142 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3178997 3178997 PRJNA661142_P_NODE_12423_length_162_cov_0.902655_g12358_i0 PRJNA661142 12423 162 0.902655 1.4623011 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 150 4.65e-32   NTclustered gi|2874254066|emb|OY970149.1| 1672391 g12358 i0 83.735 2.45061728395062 166 19 100 7 1 162 1755133 1754972 MAG: uncultured Chloroflexia bacterium isolate MFD05747.bin.c.2 genome assembly, chromosome: 1 blastn 397 150 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
13382159 13382159 PRJNA661142_P_NODE_11691_length_166_cov_0.871795_g11626_i0 PRJNA661142 11691 166 0.871795 1.4471797 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 117 4.86e-22   NTclustered gi|2874253981|emb|OY970306.1| 1672391 g11626 i0 87.879 1.10240963855422 99 12 60 0 24 122 920489 920391 MAG: uncultured Chloroflexia bacterium isolate MFD02134.bin.c.1 genome assembly, chromosome: 1 blastn 183 117 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
13382189 13382189 PRJNA661142_P_NODE_2271_length_522_cov_6.101480_g2208_i0 PRJNA661142 2271 522 6.10148 31.8497256 Herpetosiphon aurantiacus 65 Bacteria Bacteria 813 0   NTclustered gi|159889572|gb|CP000875.1| 316274 g2208 i0 98.073 1.01149425287356 467 9 89 0 28 494 356152 355686 Herpetosiphon aurantiacus DSM 785, complete genome blastn 528 813 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus
19755120 19755120 PRJNA661142_P_NODE_7956_length_267_cov_1.403670_g7891_i0 PRJNA661142 7956 267 1.40367 3.7477989 Aggregatilineales bacterium 2952883 Bacteria Bacteria 128 3.95e-25   NTclustered gi|2621701266|emb|OY759986.1| 2952883 g7891 i0 78.537 72.4831460674157 205 36 75 8 48 248 53733 53533 MAG: Aggregatilineales bacterium isolate 77605d95-9063-427a-b0a2-1f26f0f1d72f genome assembly, chromosome: 1 blastn 19353 128 1 Bacteria   Bacillati Chloroflexota Anaerolineae Aggregatilineales     Aggregatilineales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;