RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA661142" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA661142 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9556642 9556642 PRJNA661142_P_NODE_4548_length_365_cov_5.240506_g4483_i0 PRJNA661142 4548 365 5.240506 19.1278469 Acidobacteriota bacterium 1978231 Bacteria Bacteria 551 2.799999999999999e-152   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g4483 i0 96.165 178.123287671233 339 9 92 4 18 353 3299125 3299462 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 65015 551 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
13382165 13382165 PRJNA661142_P_NODE_12011_length_164_cov_0.886957_g11946_i0 PRJNA661142 12011 164 0.886957 1.45460948 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 196 5.98e-46   NTclustered gi|2874253693|emb|OY969419.1| 194844 g11946 i0 88.623 122.518292682927 167 12 100 7 1 164 5895675 5895513 MAG: uncultured Acidobacteriaceae bacterium isolate MFD03346.bin.1.13 genome assembly, chromosome: 1 blastn 20093 196 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
17206155 17206155 PRJNA661142_P_NODE_4254_length_378_cov_5.413374_g4189_i0 PRJNA661142 4254 378 5.413374 20.46255372 Acidobacteriota bacterium 1978231 Bacteria Bacteria 171 9.53e-38   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g4189 i0 82.474 20.521164021164 194 34 51 0 96 289 538744 538937 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 7757 171 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
19755109 19755109 PRJNA661142_P_NODE_7016_length_289_cov_0.850000_g6951_i0 PRJNA661142 7016 289 0.85 2.4565 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 272 1.89e-68   NTclustered gi|2874253709|emb|OY969474.1| 171953 g6951 i0 84.561 38.8477508650519 285 33 96 11 12 289 71915 71635 MAG: uncultured Acidobacteriota bacterium isolate MFD05747.bin.1.131 genome assembly, chromosome: 1 blastn 11227 272 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
19755145 19755145 PRJNA661142_P_NODE_9716_length_222_cov_2.335260_g9651_i0 PRJNA661142 9716 222 2.33526 5.1842772 Tunturiibacter lichenicola 2051959 Bacteria Bacteria 58.4 4.23e-4   NTclustered gi|2304905231|gb|CP073696.1| 2051959 g9651 i0 100 1.4954954954955 31 0 14 0 127 157 1113208 1113238 Tunturiibacter lichenicola strain DSM 104462 chromosome, complete genome blastn 332 58.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Tunturiibacter Tunturiibacter lichenicola
22305466 22305466 PRJNA661142_P_NODE_9898_length_218_cov_1.047337_g9833_i0 PRJNA661142 9898 218 1.047337 2.28319466 Acidobacteriota bacterium 1978231 Bacteria Bacteria 226 1.07e-54   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g9833 i0 88.021 230.683486238532 192 22 88 1 1 191 3298423 3298232 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 50289 226 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;