RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA658591" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA658591 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1161375 1161375 PRJNA658591_S_NODE_8801_length_169_cov_1.216667_g8738_i0 PRJNA658591 8801 169 1.216667 2.05616723 root 1 Root_unresolved Root_unresolved 313 5.859999999999999e-81   NTclustered gi|2850837537|gb|PQ578042.1| 239 g8738 i0 100 105.988165680473 169 0 100 0 1 169 1268 1100 Flavobacterium sp. strain TBRC 19031 16S ribosomal RNA gene, partial sequence blastn 17912 313 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp.
1901652 1901652 PRJNA658591_S_NODE_2422_length_274_cov_5.604444_g2359_i0 PRJNA658591 2422 274 5.604444 15.35617656 Flavobacterium mekongense 3379707 Bacteria Bacteria 507 4.47e-139   NTclustered gi|2892685955|gb|CP174374.1| 3379707 g2359 i0 100 478.412408759124 274 0 100 0 1 274 1249674 1249401 Flavobacterium sp. TBRC 19031 chromosome, complete genome blastn 131085 507 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium mekongense
5728942 5728942 PRJNA658591_S_NODE_8645_length_170_cov_1.289256_g8582_i0 PRJNA658591 8645 170 1.289256 2.1917352 Cloacibacterium caeni 2004710 Bacteria Bacteria 315 1.64e-81   NTclustered gi|2040340748|emb|OU015321.1| 2004710 g8582 i0 100 401.994117647059 170 0 100 0 1 170 1872413 1872244 Cloacibacterium caeni isolate Isolate2 genome assembly, chromosome: 1 blastn 68339 315 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Cloacibacterium Cloacibacterium caeni
7539310 7539310 PRJNA658591_S_NODE_10546_length_160_cov_3.504505_g10483_i0 PRJNA658591 10546 160 3.504505 5.607208 Flavobacterium 237 Bacteria Bacteria 296 5.55e-76   NTclustered gi|2892685955|gb|CP174374.1| 3379707 g10483 i0 100 529.275 160 0 100 0 1 160 1249807 1249648 Flavobacterium sp. TBRC 19031 chromosome, complete genome blastn 84684 296 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium mekongense
8278753 8278753 PRJNA658591_S_NODE_8967_length_168_cov_1.638655_g8904_i0 PRJNA658591 8967 168 1.638655 2.7529404 Sediminibacterium sp. KACHI17 1751071 Bacteria Bacteria 283 4.6e-72   NTclustered gi|2690291631|dbj|AP029612.1| 1751071 g8904 i0 97.024 85.7440476190476 168 5 100 0 1 168 2978001 2977834 Sediminibacterium sp. KACHI17 DNA, complete genome blastn 14405 283 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium Sediminibacterium sp. KACHI17
13379589 13379589 PRJNA658591_S_NODE_4291_length_219_cov_7.370588_g4228_i0 PRJNA658591 4291 219 7.370588 16.14158772 Flavobacterium sp. TBRC 19032 3379707 Bacteria Bacteria 388 1.3e-103   NTclustered gi|2892685960|gb|CP174373.1| 3379708 g4228 i0 98.63 540.269406392694 219 3 100 0 1 219 1283009 1283227 Flavobacterium sp. TBRC 19032 chromosome, complete genome blastn 118319 388 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. TBRC 19032
15928417 15928417 PRJNA658591_S_NODE_7813_length_176_cov_2.598425_g7750_i0 PRJNA658591 7813 176 2.598425 4.573228 Sediminibacterium sp. KACHI17 1751071 Bacteria Bacteria 267 4.8699999999999996e-67   NTclustered gi|2690291631|dbj|AP029612.1| 1751071 g7750 i0 98.667 227.630681818182 150 2 85 0 27 176 2978466 2978317 Sediminibacterium sp. KACHI17 DNA, complete genome blastn 40063 267 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium Sediminibacterium sp. KACHI17
21563370 21563370 PRJNA658591_S_NODE_7457_length_179_cov_2.269231_g7394_i0 PRJNA658591 7457 179 2.269231 4.06192349 Flavobacterium 237 Bacteria Bacteria 331 1.74e-86   NTclustered gi|2892685955|gb|CP174374.1| 3379707 g7394 i0 100 463.765363128492 179 0 100 0 1 179 1250100 1249922 Flavobacterium sp. TBRC 19031 chromosome, complete genome blastn 83014 331 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium mekongense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;