RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA658591" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA658591 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
625467 625467 PRJNA658591_S_NODE_11601_length_151_cov_5.127451_g11538_i0 PRJNA658591 11601 151 5.127451 7.74245101 Jeotgalicoccus sp. ATCC 8456 946435 Bacteria Bacteria 102 1.21e-17   NTclustered gi|1949519824|gb|CP066224.1| 946435 g11538 i0 81.818 2.44370860927152 121 22 80 0 14 134 1353474 1353354 Jeotgalicoccus sp. ATCC 8456 chromosome, complete genome blastn 369 102 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Jeotgalicoccus Jeotgalicoccus sp. ATCC 8456
12640601 12640601 PRJNA658591_S_NODE_7970_length_175_cov_1.238095_g7907_i0 PRJNA658591 7970 175 1.238095 2.16666625 Streptococcus 1301 Bacteria Bacteria 244 2.2699999999999998e-60   NTclustered gi|1403375826|emb|LS483375.1| 1302 g7907 i0 100 326.057142857143 132 0 100 0 1 132 624814 624945 Streptococcus gordonii strain NCTC3165 genome assembly, chromosome: 1 blastn 57060 244 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus gordonii
13915410 13915410 PRJNA658591_S_NODE_10871_length_157_cov_3.870370_g10808_i0 PRJNA658591 10871 157 3.87037 6.0764809 root 1 Root_unresolved Root_unresolved 279 5.46e-71   NTclustered gi|1370563981|gb|CP027781.1| 1491 g10808 i0 100 96.1337579617834 151 0 96 0 1 151 3985152 3985302 Clostridium botulinum strain MAP 5 chromosome, complete genome blastn 15093 279 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;