RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA658591" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 5 ✖

bioproject 1

  • PRJNA658591 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3713148 3713148 PRJNA658591_S_NODE_3003_length_251_cov_4.133663_g2940_i0 PRJNA658591 3003 251 4.133663 10.37549413 Deinococcus 1298 Bacteria Bacteria 464 2.47e-126   NTclustered gi|1435316362|gb|CP031158.1| 980427 g2940 i0 100 204.808764940239 251 0 100 0 1 251 1791711 1791461 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 51407 464 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
3713152 3713152 PRJNA658591_S_NODE_4563_length_215_cov_1.253012_g4500_i0 PRJNA658591 4563 215 1.253012 2.6939758 Deinococcus 1298 Bacteria Bacteria 398 2.1099999999999997e-106   NTclustered gi|1435316362|gb|CP031158.1| 980427 g4500 i0 100 239.013953488372 215 0 100 0 1 215 1791876 1792090 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 51388 398 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
10090018 10090018 PRJNA658591_S_NODE_2768_length_260_cov_1.364929_g2705_i0 PRJNA658591 2768 260 1.364929 3.5488154 Deinococcus 1298 Bacteria Bacteria 470 5.519999999999998e-128   NTclustered gi|1435316362|gb|CP031158.1| 980427 g2705 i0 99.231 299.246153846154 260 2 100 0 1 260 2148013 2147754 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 77804 470 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
10090019 10090019 PRJNA658591_S_NODE_2788_length_259_cov_3.428571_g2725_i0 PRJNA658591 2788 259 3.428571 8.87999889 Deinococcus 1298 Bacteria Bacteria 479 9.13e-131   NTclustered gi|1435316362|gb|CP031158.1| 980427 g2725 i0 100 212.88416988417 259 0 100 0 1 259 1792514 1792772 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 55137 479 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
20287749 20287749 PRJNA658591_S_NODE_8496_length_171_cov_1.303279_g8433_i0 PRJNA658591 8496 171 1.303279 2.22860709 Deinococcus 1298 Bacteria Bacteria 316 4.6e-82   NTclustered gi|1435316362|gb|CP031158.1| 980427 g8433 i0 100 196.690058479532 171 0 100 0 1 171 1793624 1793454 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 33634 316 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;