RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA658591" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA658591 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4453403 4453403 PRJNA658591_S_NODE_9444_length_166_cov_0.888889_g9381_i0 PRJNA658591 9444 166 0.888889 1.47555574 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 215 1.68e-51   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g9381 i0 90 279.114457831325 170 11 100 6 1 166 7052303 7052470 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 46333 215 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
12640592 12640592 PRJNA658591_S_NODE_10310_length_162_cov_1.079646_g10247_i0 PRJNA658591 10310 162 1.079646 1.74902652 Singulisphaera 466152 Bacteria Bacteria 250 4.45e-62   NTclustered gi|485099129|ref|NR_102524.1| 466153 g10247 i0 94.444 173.246913580247 162 9 100 0 1 162 1593 1754 Singulisphaera acidiphila strain MOB10 23S ribosomal RNA gene, complete sequence blastn 28066 250 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Singulisphaera Singulisphaera acidiphila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;