contig_metadata
17 rows where analysis = "blastn", bioproject = "PRJNA657860" and tax_clade = "FCB group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 625463 | 625463 | PRJNA657860_P_NODE_881_length_353_cov_2.832278_g825_i0 | PRJNA657860 | 881 | 353 | 2.832278 | 9.99794134 | Prevotella sp. GTC17259 | 3236795 | Bacteria | Bacteria | 479 | 1.2899999999999996e-130 | NTclustered | gi|2774262205|dbj|AP035787.1| | 3236795 | g825 | i0 | 91.292 | 271.101983002833 | 356 | 23 | 100 | 6 | 1 | 353 | 884073 | 884423 | Prevotella sp. GTC17259 DNA, complete genome | blastn | 95699 | 479 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidia | Bacteroidales | Prevotellaceae | Prevotella | Prevotella sp. GTC17259 | |
| 1161364 | 1161364 | PRJNA657860_P_NODE_1661_length_246_cov_2.918660_g1605_i0 | PRJNA657860 | 1661 | 246 | 2.91866 | 7.1799036 | Flavobacteriaceae | 49546 | Bacteria | Bacteria | 399 | 6.889999999999999e-107 | NTclustered | gi|1866591240|gb|CP058364.1| | 1170699 | g1605 | i0 | 95.951 | 604.166666666667 | 247 | 9 | 100 | 1 | 1 | 246 | 366278 | 366032 | Galbibacter sp. BG1 chromosome, complete genome | blastn | 148625 | 399 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Galbibacter | Galbibacter sp. BG1 | |
| 1161365 | 1161365 | PRJNA657860_P_NODE_1801_length_234_cov_1.329949_g1745_i0 | PRJNA657860 | 1801 | 234 | 1.329949 | 3.11208066 | Prevotella | 838 | Bacteria | Bacteria | 278 | 3.18e-70 | NTclustered | gi|2774262205|dbj|AP035787.1| | 3236795 | g1745 | i0 | 88.889 | 257.25641025641 | 225 | 25 | 100 | 0 | 1 | 225 | 884874 | 885098 | Prevotella sp. GTC17259 DNA, complete genome | blastn | 60198 | 278 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidia | Bacteroidales | Prevotellaceae | Prevotella | Prevotella sp. GTC17259 | |
| 4989689 | 4989689 | PRJNA657860_P_NODE_1744_length_239_cov_0.950495_g1688_i0 | PRJNA657860 | 1744 | 239 | 0.950495 | 2.27168305 | Mucilaginibacter | 423349 | Bacteria | Bacteria | 248 | 2.55e-61 | NTclustered | gi|1008898244|gb|CP014773.1| | 1300914 | g1688 | i0 | 94.969 | 235.853556485356 | 159 | 7 | 69 | 1 | 81 | 239 | 475298 | 475141 | Mucilaginibacter sp. PAMC 26640 chromosome, complete genome | blastn | 56369 | 248 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Sphingobacteriia | Sphingobacteriales | Sphingobacteriaceae | Mucilaginibacter | Mucilaginibacter sp. PAMC 26640 | |
| 4989690 | 4989690 | PRJNA657860_P_NODE_1844_length_230_cov_3.300518_g1788_i0 | PRJNA657860 | 1844 | 230 | 3.300518 | 7.5911914 | Weeksellaceae | 2762318 | Bacteria | Bacteria | 412 | 8.18e-111 | NTclustered | gi|2620028799|gb|CP084355.1| | 34085 | g1788 | i0 | 99.13 | 373.926086956522 | 230 | 1 | 100 | 1 | 1 | 230 | 1136820 | 1136592 | Riemerella anatipestifer strain RA-PNBC-21-0706-AS chromosome | blastn | 86003 | 412 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Riemerella | Riemerella anatipestifer | |
| 10090012 | 10090012 | PRJNA657860_P_NODE_3528_length_156_cov_3.058824_g3472_i0 | PRJNA657860 | 3528 | 156 | 3.058824 | 4.77176544 | Cloacibacterium | 501783 | Bacteria | Bacteria | 287 | 3.24e-73 | NTclustered | gi|2040340748|emb|OU015321.1| | 2004710 | g3472 | i0 | 100 | 465.160256410256 | 155 | 0 | 99 | 0 | 1 | 155 | 1872400 | 1872554 | Cloacibacterium caeni isolate Isolate2 genome assembly, chromosome: 1 | blastn | 72565 | 287 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Cloacibacterium | Cloacibacterium caeni | |
| 11364828 | 11364828 | PRJNA657860_P_NODE_1829_length_232_cov_1.143590_g1773_i0 | PRJNA657860 | 1829 | 232 | 1.14359 | 2.6531288 | Elizabethkingia | 308865 | Bacteria | Bacteria | 189 | 1.5199999999999996e-43 | NTclustered | gi|1979345949|gb|CP069277.1| | 1117645 | g1773 | i0 | 83.028 | 388.211206896552 | 218 | 27 | 92 | 9 | 1 | 213 | 361072 | 361284 | Elizabethkingia anophelis strain SEA01 chromosome, complete genome | blastn | 90065 | 189 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Elizabethkingia | Elizabethkingia anophelis | |
| 17203442 | 17203442 | PRJNA657860_P_NODE_2754_length_179_cov_1.028169_g2698_i0 | PRJNA657860 | 2754 | 179 | 1.0281690000000001 | 1.84042251 | Empedobacter stercoris | 1628248 | Bacteria | Bacteria | 326 | 8.09e-85 | NTclustered | gi|2304450266|gb|CP104209.1| | 1628248 | g2698 | i0 | 100 | 307.240223463687 | 176 | 0 | 100 | 0 | 1 | 176 | 85146 | 85321 | Empedobacter stercoris strain SCVM0123 chromosome, complete genome | blastn | 54996 | 326 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Empedobacter | Empedobacter stercoris | |
| 18477738 | 18477738 | PRJNA657860_P_NODE_1955_length_220_cov_2.224044_g1899_i0 | PRJNA657860 | 1955 | 220 | 2.224044 | 4.8928968 | Porphyromonas sp. oral taxon 275 | 712435 | Bacteria | Bacteria | 346 | 7.980000000000001e-91 | NTclustered | gi|2028834772|gb|CP072333.1| | 712435 | g1899 | i0 | 95.023 | 437.754545454545 | 221 | 9 | 100 | 2 | 1 | 220 | 442756 | 442975 | Porphyromonas sp. oral taxon 275 strain W7780 chromosome, complete genome | blastn | 96306 | 346 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidia | Bacteroidales | Porphyromonadaceae | Porphyromonas | Porphyromonas sp. oral taxon 275 | |
| 18477749 | 18477749 | PRJNA657860_P_NODE_2915_length_173_cov_1.411765_g2859_i0 | PRJNA657860 | 2915 | 173 | 1.411765 | 2.44235345 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 281 | 1.7e-71 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g2859 | i0 | 95.954 | 278.560693641619 | 173 | 7 | 100 | 0 | 1 | 173 | 1902427 | 1902255 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 48191 | 281 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 19012926 | 19012926 | PRJNA657860_P_NODE_2015_length_215_cov_1.859551_g1959_i0 | PRJNA657860 | 2015 | 215 | 1.859551 | 3.99803465 | Flavobacterium | 237 | Bacteria | Bacteria | 231 | 2.27e-56 | NTclustered | gi|2153913845|gb|CP087135.1| | 2893886 | g1959 | i0 | 86.449 | 541.502325581395 | 214 | 25 | 99 | 4 | 3 | 214 | 1907139 | 1906928 | Flavobacterium galactosidilyticum strain F-340 chromosome, complete genome | blastn | 116423 | 231 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium galactosidilyticum | |
| 19012928 | 19012928 | PRJNA657860_P_NODE_2355_length_196_cov_1.433962_g2299_i0 | PRJNA657860 | 2355 | 196 | 1.433962 | 2.81056552 | Gemmatimonadota | 142182 | Bacteria | Bacteria | 261 | 2.5900000000000002e-65 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g2299 | i0 | 90.816 | 289.505102040816 | 196 | 17 | 100 | 1 | 1 | 196 | 1904156 | 1903962 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 56743 | 263 | 0.992395437262357 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 19752444 | 19752444 | PRJNA657860_P_NODE_1376_length_278_cov_1.713693_g1320_i0 | PRJNA657860 | 1376 | 278 | 1.713693 | 4.76406654 | Flavobacterium channae | 2897181 | Bacteria | Bacteria | 475 | 1.2799999999999997e-129 | NTclustered | gi|2164478757|gb|CP089096.1| | 2897181 | g1320 | i0 | 99.615 | 455.521582733813 | 260 | 1 | 94 | 0 | 1 | 260 | 486201 | 485942 | Flavobacterium channae strain KSM-R2A30 chromosome, complete genome | blastn | 126635 | 475 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium channae | |
| 19752448 | 19752448 | PRJNA657860_P_NODE_1916_length_224_cov_2.877005_g1860_i0 | PRJNA657860 | 1916 | 224 | 2.877005 | 6.4444912 | Prevotella sp. oral taxon 475 | 712471 | Bacteria | Bacteria | 361 | 2.9099999999999993e-95 | NTclustered | gi|2028838898|gb|CP072334.1| | 712471 | g1860 | i0 | 95.964 | 270.580357142857 | 223 | 7 | 99 | 1 | 1 | 223 | 657063 | 656843 | Prevotella sp. oral taxon 475 strain F0059 chromosome, complete genome | blastn | 60610 | 361 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidia | Bacteroidales | Prevotellaceae | Prevotella | Prevotella sp. oral taxon 475 | |
| 21027974 | 21027974 | PRJNA657860_P_NODE_1357_length_279_cov_3.392562_g1301_i0 | PRJNA657860 | 1357 | 279 | 3.392562 | 9.46524798 | Epilithonimonas vandammei | 2487072 | Bacteria | Bacteria | 516 | 7.58e-142 | NTclustered | gi|1527187866|gb|CP034161.1| | 2487072 | g1301 | i0 | 100 | 500.888888888889 | 279 | 0 | 100 | 0 | 1 | 279 | 806634 | 806912 | Epilithonimonas vandammei strain F5649 chromosome, complete genome | blastn | 139748 | 516 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Epilithonimonas | Epilithonimonas vandammei | |
| 21027996 | 21027996 | PRJNA657860_P_NODE_3337_length_161_cov_1.556452_g3281_i0 | PRJNA657860 | 3337 | 161 | 1.556452 | 2.50588772 | Emticicia sp. 21SJ11W-3 | 2916755 | Bacteria | Bacteria | 248 | 1.59e-61 | NTclustered | gi|2264098040|gb|CP092074.1| | 2916755 | g3281 | i0 | 94.969 | 380.795031055901 | 159 | 6 | 98 | 2 | 4 | 161 | 111830 | 111987 | Emticicia sp. 21SJ11W-3 chromosome, complete genome | blastn | 61308 | 248 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Cytophagia | Cytophagales | Leadbetterellaceae | Emticicia | Emticicia sp. 21SJ11W-3 | |
| 25387850 | 25387850 | PRJNA657860_P_NODE_1440_length_270_cov_4.845494_g1384_i0 | PRJNA657860 | 1440 | 270 | 4.845494 | 13.0828338 | Weeksellaceae | 2762318 | Bacteria | Bacteria | 488 | 1.5899999999999995e-133 | NTclustered | gi|2034626265|gb|CP064938.1| | 651561 | g1384 | i0 | 99.259 | 513.022222222222 | 270 | 2 | 100 | 0 | 1 | 270 | 34507 | 34776 | Chryseobacterium arthrosphaerae strain SQ099 chromosome | blastn | 138516 | 488 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Chryseobacterium | Chryseobacterium arthrosphaerae |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;