RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA657343" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA657343 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4452108 4452108 PRJNA657343_S_NODE_32884_length_151_cov_5.607843_g32859_i0 PRJNA657343 32884 151 5.607843 8.46784293 Horticoccus luteus 2862869 Bacteria Bacteria 244 1.89e-60   NTclustered gi|2077391884|gb|CP080507.1| 2862869 g32859 i0 98.561 33.4437086092715 139 1 92 1 1 139 540019 540156 Horticoccus luteus strain KSB-15 chromosome, complete genome blastn 5050 244 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Horticoccus Horticoccus luteus
14653141 14653141 PRJNA657343_S_NODE_31612_length_156_cov_2.457944_g31587_i0 PRJNA657343 31612 156 2.457944 3.83439264 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 206 9.32e-49   NTclustered gi|2916415364|gb|CP170459.1| 2026799 g31587 i0 90.446 94.974358974359 157 14 100 1 1 156 2577657 2577813 MAG: Verrucomicrobiota bacterium isolate tig00002468 chromosome, complete genome blastn 14816 206 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
15189027 15189027 PRJNA657343_S_NODE_28732_length_166_cov_2.350427_g28707_i0 PRJNA657343 28732 166 2.350427 3.90170882 Verrucomicrobiota 74201 Bacteria Bacteria 182 1.7e-41   NTclustered gi|2874254065|emb|OY970130.1| 412056 g28707 i0 89.041 31.7710843373494 146 16 88 0 1 146 5152316 5152461 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 5274 182 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
18475791 18475791 PRJNA657343_S_NODE_15155_length_233_cov_3.320652_g15130_i0 PRJNA657343 15155 233 3.320652 7.73711916 Lacunisphaera limnophila 1838286 Bacteria Bacteria 335 1.8499999999999992e-87   NTclustered gi|1070531674|gb|CP016094.1| 1838286 g15130 i0 94.47 110.609442060086 217 12 93 0 2 218 2556208 2556424 Lacunisphaera limnophila strain IG16b, complete genome blastn 25772 335 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera limnophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;