RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA657343" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA657343 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
622849 622849 PRJNA657343_P_NODE_17781_length_217_cov_0.922619_g17757_i0 PRJNA657343 17781 217 0.922619 2.00208323 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 357 3.63e-94   NTclustered gi|421976335|gb|JQ519484.1| 5778 g17757 i0 97.156 43.7695852534562 211 6 97 0 6 216 361 151 Vermamoeba vermiformis clone JGHverm1 beta-tubulin gene, partial cds blastn 9498 357 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
623114 623114 PRJNA657343_P_NODE_401_length_805_cov_57.970899_g390_i0 PRJNA657343 401 805 57.970899 466.66573695 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 327 1.2e-84   NTclustered gi|511487963|gb|JX898537.1| 1260765 g390 i0 83.696 21.583850931677 368 38 44 14 190 543 1 360 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 17375 327 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
3712142 3712142 PRJNA657343_P_NODE_39003_length_166_cov_0.888889_g38979_i0 PRJNA657343 39003 166 0.888889 1.47555574 Vermamoeba 1260114 Tubulinea other_Eukaryota 279 5.86e-71   NTclustered gi|909719645|gb|KT185625.1| 5778 g38979 i0 98.125 81.078313253012 160 3 96 0 3 162 5015 5174 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 13459 279 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4450788 4450788 PRJNA657343_P_NODE_2064_length_478_cov_2.251748_g2041_i0 PRJNA657343 2064 478 2.251748 10.76335544 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 752 0   NTclustered gi|62910949|gb|AY925001.1| 5778 g2041 i0 95.532 4.84937238493724 470 21 98 0 5 474 265 734 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 2318 752 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5727612 5727612 PRJNA657343_S_NODE_31645_length_156_cov_2.074766_g31620_i0 PRJNA657343 31645 156 2.074766 3.23663496 Lobosea sp. Mb_5C 507804 Tubulinea other_Eukaryota 270 3.2599999999999996e-68   NTclustered gi|169264626|dbj|AB425950.1| 507804 g31620 i0 98.077 9.41666666666667 156 1 100 2 1 156 637 790 Lobosea sp. Mb_5C gene for 18S ribosomal RNA, partial sequence blastn 1469 270 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Mb_5C
10088992 10088992 PRJNA657343_P_NODE_108_length_1167_cov_72.902504_g105_i0 PRJNA657343 108 1167 72.902504 850.77222168 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 1690 0   NTclustered gi|399764278|gb|JQ271789.1| 1215998 g105 i0 92.967 39.2245072836333 1166 73 99 8 3 1164 1161 1 Tubulinea group 04 sp. P18 18S ribosomal RNA gene, partial sequence blastn 45775 1690 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. P18
12102360 12102360 PRJNA657343_P_NODE_21910_length_200_cov_3.311258_g21886_i0 PRJNA657343 21910 200 3.311258 6.622516 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 318 1.55e-82   NTclustered gi|423292048|gb|JQ519470.1| 5778 g21886 i0 95.918 21.69 196 8 98 0 3 198 126 321 Vermamoeba vermiformis clone JG10.132_b5 alpha tubulin gene, partial cds blastn 4338 318 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14652073 14652073 PRJNA657343_P_NODE_37752_length_167_cov_0.881356_g37728_i0 PRJNA657343 37752 167 0.881356 1.47186452 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 117 4.900000000000001e-22   NTclustered gi|88601207|gb|DQ384272.1| 5778 g37728 i0 87.879 0.592814371257485 99 12 59 0 30 128 225 127 Hartmannella vermiformis unknown mRNA blastn 99 117 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19011913 19011913 PRJNA657343_P_NODE_30675_length_177_cov_2.718750_g30651_i0 PRJNA657343 30675 177 2.71875 4.8121875 Vermamoeba 1260114 Tubulinea other_Eukaryota 318 1.34e-82   NTclustered gi|300078496|gb|GU001158.1| 5778 g30651 i0 100 37.2146892655367 172 0 97 0 3 174 2716 2887 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6587 318 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21562502 21562502 PRJNA657343_S_NODE_28537_length_166_cov_21.940171_g28512_i0 PRJNA657343 28537 166 21.940171 36.42068386 Hartmannellidae 5776 Tubulinea other_Eukaryota 294 2.09e-75   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g28512 i0 100 95.9397590361446 159 0 96 0 3 161 1044 1202 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 15926 294 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
25386863 25386863 PRJNA657343_P_NODE_6380_length_316_cov_4.707865_g6356_i0 PRJNA657343 6380 316 4.707865 14.8768534 Vermamoeba 1260114 Tubulinea other_Eukaryota 577 3.9499999999999996e-160   NTclustered gi|2463802139|gb|OQ678078.1| 5778 g6356 i0 99.683 99.6582278481013 315 1 99 0 1 315 11 325 Vermamoeba vermiformis isolate IQ5E small subunit ribosomal RNA gene, partial sequence blastn 31492 577 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25386865 25386865 PRJNA657343_P_NODE_9040_length_278_cov_40.349345_g9016_i0 PRJNA657343 9040 278 40.349345 112.1711791 Echinamoeba 136449 Tubulinea other_Eukaryota 342 1.36e-89   NTclustered gi|399764170|gb|JQ271681.1| 1215984 g9016 i0 89.706 52.2194244604317 272 22 97 5 3 272 1542 1275 Echinamoeba silvestris strain UKNCC:CCAP1519/1 18S ribosomal RNA gene, partial sequence blastn 14517 342 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba silvestris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;