RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA657343" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA657343 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15927030 15927030 PRJNA657343_S_NODE_29333_length_164_cov_3.721739_g29308_i0 PRJNA657343 29333 164 3.721739 6.10365196 Syndesmis kurakaikina 2711315 Platyhelminthes Platyhelminthes 121 3.7e-23   NTclustered gi|1858375042|gb|MT622644.1| 2711315 g29308 i0 83.721 52.1585365853659 129 19 78 2 14 141 6066 6193 Syndesmis kurakaikina small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8554 121 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Umagillidae Syndesmis Syndesmis kurakaikina
17200964 17200964 PRJNA657343_P_NODE_26014_length_188_cov_2.841727_g25990_i0 PRJNA657343 26014 188 2.841727 5.34244676 Echinococcus granulosus 6210 Platyhelminthes Platyhelminthes 172 1.19e-38   NTclustered gi|1373856714|ref|XM_024494734.1| 6210 g25990 i0 84.153 25.5159574468085 183 23 96 6 6 185 477 656 Echinococcus granulosus 60S ribosomal protein L8 (EGR_05485), partial mRNA blastn 4797 172 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus
21025343 21025343 PRJNA657343_P_NODE_16177_length_224_cov_3.154286_g16153_i0 PRJNA657343 16177 224 3.154286 7.06560064 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 172 1.46e-38   NTclustered gi|1369885|gb|L78441.1|SCM14332R 6183 g16153 i0 85.802 0.723214285714286 162 23 72 0 4 165 162 1 Schistosoma mansoni 14-3-3-2 mRNA, 3' end of cds blastn 162 172 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;