RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA657343" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA657343 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
623196 623196 PRJNA657343_P_NODE_5141_length_343_cov_1.697279_g5118_i0 PRJNA657343 5141 343 1.697279 5.82166697 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 211 5.06e-50   NTclustered gi|673036227|ref|XM_008873853.1| 157072 g5118 i0 80 21.4314868804665 285 57 83 0 12 296 1231 947 Aphanomyces invadans adenosylhomocysteinase 2 mRNA blastn 7351 211 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
1899149 1899149 PRJNA657343_P_NODE_28922_length_181_cov_2.537879_g28898_i0 PRJNA657343 28922 181 2.537879 4.59356099 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 111 2.5e-20   NTclustered gi|673017229|ref|XM_008864354.1| 157072 g28898 i0 83.2 35.0773480662983 125 18 69 3 46 169 434 312 Aphanomyces invadans hypothetical protein mRNA blastn 6349 111 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
1900340 1900340 PRJNA657343_S_NODE_31322_length_157_cov_2.953704_g31297_i0 PRJNA657343 31322 157 2.953704 4.63731528 Lagenidium sp. PWL-2010f 884622 SAR_Eukaryotes SAR_Eukaryotes 285 1.17e-72   NTclustered gi|320578969|gb|HQ395652.1| 884622 g31297 i0 99.363 100 157 1 100 0 1 157 68 224 Lagenidium sp. PWL-2010f strain CBS 127284 28S ribosomal RNA gene, partial sequence blastn 15700 285 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium sp. PWL-2010f
4450970 4450970 PRJNA657343_P_NODE_35864_length_168_cov_2.445378_g35840_i0 PRJNA657343 35864 168 2.445378 4.10823504 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 128 2.28e-25   NTclustered gi|698810681|ref|XM_009840068.1| 112090 g35840 i0 81.699 6.84523809523809 153 28 91 0 4 156 127 279 Aphanomyces astaci S-adenosylmethionine synthase 2 mRNA blastn 1150 128 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
12102420 12102420 PRJNA657343_P_NODE_27370_length_185_cov_1.522059_g27346_i0 PRJNA657343 27370 185 1.522059 2.81580915 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 161 2.52e-35   NTclustered gi|2794916194|ref|XM_067893314.1| 164328 g27346 i0 84.242 68.1513513513514 165 26 89 0 1 165 954 1118 Phytophthora ramorum Heat shock 70 kDa protein (KRP23_7938), partial mRNA blastn 12608 161 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
14651798 14651798 PRJNA657343_P_NODE_15232_length_229_cov_5.988889_g15208_i0 PRJNA657343 15232 229 5.988889 13.71455581 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 195 3.21e-45   NTclustered gi|675211346|ref|XM_008916310.1| 761204 g15208 i0 88.272 49.4148471615721 162 19 71 0 18 179 429 268 Phytophthora parasitica INRA-310 60S ribosomal protein L44 mRNA blastn 11316 195 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;