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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA657343" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA657343 · 14 ✖

analysis 1

  • blastn · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1160420 1160420 PRJNA657343_S_NODE_18121_length_212_cov_4.889571_g18096_i0 PRJNA657343 18121 212 4.889571 10.36589052 Caenorhabditis 6237 Nematoda Nematoda 383 5.82e-102   NTclustered gi|2460759835|gb|OQ645709.1| 6239 g18096 i0 99.065 101.839622641509 214 0 100 2 1 212 36 249 Caenorhabditis elegans strain H60A small subunit ribosomal RNA gene, partial sequence blastn 21590 383 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
1899104 1899104 PRJNA657343_P_NODE_24162_length_193_cov_1.736111_g24138_i0 PRJNA657343 24162 193 1.736111 3.35069423 Caenorhabditis remanei 31234 Nematoda Nematoda 132 2.08e-26   NTclustered gi|2445394195|ref|XM_053735924.1| 31234 g24138 i0 79.679 3.33160621761658 187 35 95 2 3 186 618 804 Caenorhabditis remanei uncharacterized protein (GCK72_024516), partial mRNA blastn 643 132 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
6264181 6264181 PRJNA657343_P_NODE_46705_length_155_cov_2.584906_g46681_i0 PRJNA657343 46705 155 2.584906 4.0066043 Caenorhabditis 6237 Nematoda Nematoda 95.3 2.09e-15   NTclustered gi|1831509458|ref|NM_064556.7| 6239 g46681 i0 93.651 2.90322580645161 63 4 41 0 44 106 72 10 Caenorhabditis elegans Large ribosomal subunit protein eL43 (rpl-37A), partial mRNA blastn 450 95.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6264273 6264273 PRJNA657343_S_NODE_30225_length_161_cov_240.973214_g30200_i0 PRJNA657343 30225 161 240.973214 387.96687454 Caenorhabditis 6237 Nematoda Nematoda 294 2.01e-75   NTclustered gi|356605872|gb|JN636061.1| 6238 g30200 i0 100 100.316770186335 159 0 99 0 1 159 1305 1147 Caenorhabditis briggsae 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 16151 294 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
11363839 11363839 PRJNA657343_S_NODE_10169_length_281_cov_4.745690_g10144_i0 PRJNA657343 10169 281 4.74569 13.3353889 Caenorhabditis 6237 Nematoda Nematoda 508 1.28e-139   NTclustered gi|25167357|ref|NR_000053.1| 6239 g10144 i0 99.288 96.9679715302491 281 2 100 0 1 281 651 931 Caenorhabditis elegans 18S ribosomal RNA (rrn-1.1), rRNA blastn 27248 508 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
12102501 12102501 PRJNA657343_P_NODE_350_length_839_cov_24.415190_g339_i0 PRJNA657343 350 839 24.41519 204.8434441 Caenorhabditis briggsae 6238 Nematoda Nematoda 575 4.0499999999999985e-159   NTclustered gi|2158429559|ref|XM_045243633.1| 6238 g339 i0 84.817 225.160905840286 573 85 68 2 266 837 2303 1732 Caenorhabditis briggsae Protein CBR-UBQ-1 (Cbr-ubq-1), partial mRNA blastn 188910 575 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
13376881 13376881 PRJNA657343_P_NODE_12371_length_248_cov_1.844221_g12347_i0 PRJNA657343 12371 248 1.844221 4.57366808 Strongyloides ratti 34506 Nematoda Nematoda 169 2.13e-37   NTclustered gi|1376154927|ref|XM_024651418.1| 34506 g12347 i0 85.625 4.94354838709677 160 23 65 0 89 248 398 239 Strongyloides ratti Histone H3 (SRAE_X000165500), partial mRNA blastn 1226 169 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
13378045 13378045 PRJNA657343_S_NODE_25831_length_175_cov_11.579365_g25806_i0 PRJNA657343 25831 175 11.579365 20.26388875 Caenorhabditis elegans 6239 Nematoda Nematoda 316 4.74e-82   NTclustered gi|256561710|gb|FJ589010.1| 6239 g25806 i0 100 69.2514285714286 171 0 98 0 5 175 274 444 Caenorhabditis elegans isolate X5005 large subunit ribosomal RNA gene, partial sequence blastn 12119 316 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
15926714 15926714 PRJNA657343_S_NODE_21353_length_195_cov_2.198630_g21328_i0 PRJNA657343 21353 195 2.19863 4.2873285 Caenorhabditis elegans 6239 Nematoda Nematoda 359 8.87e-95   NTclustered gi|1879207294|gb|MT797802.1| 6239 g21328 i0 100 91.9641025641026 194 0 99 0 1 194 264 71 Caenorhabditis elegans isolate KZN large subunit ribosomal RNA gene, partial sequence blastn 17933 359 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17200822 17200822 PRJNA657343_P_NODE_14874_length_231_cov_8.906593_g14850_i0 PRJNA657343 14874 231 8.906593 20.57422983 Strongyloides papillosus 174720 Nematoda Nematoda 93.5 1.22e-14   NTclustered gi|374718486|gb|JF326461.1| 174720 g14850 i0 94.915 4.64935064935065 59 3 26 0 31 89 421 479 Strongyloides papillosus glyceraldehyde-3-phosphate dehydrogenase mRNA, partial cds blastn 1074 93.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
17202237 17202237 PRJNA657343_S_NODE_32894_length_151_cov_5.254902_g32869_i0 PRJNA657343 32894 151 5.254902 7.93490202 Caenorhabditis waitukubuli 2305864 Nematoda Nematoda 274 2.42e-69   NTclustered gi|1464633274|gb|MH800335.1| 2305864 g32869 i0 99.338 51.523178807947 151 1 100 0 1 151 4061 4211 Caenorhabditis waitukubuli strain NIC564 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7780 274 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis waitukubuli
18476434 18476434 PRJNA657343_S_NODE_30215_length_162_cov_0.911504_g30190_i0 PRJNA657343 30215 162 0.911504 1.47663648 Caenorhabditis elegans 6239 Nematoda Nematoda 298 1.57e-76   NTclustered gi|1627531|emb|Z81028.1| 6239 g30190 i0 100 2.98148148148148 161 0 99 0 2 162 22653 22493 Caenorhabditis elegans Cosmid B0365, complete sequence blastn 483 298 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19750687 19750687 PRJNA657343_S_NODE_21016_length_196_cov_9.231293_g20991_i0 PRJNA657343 21016 196 9.231293 18.09333428 Caenorhabditis elegans 6239 Nematoda Nematoda 309 9.11e-80   NTclustered gi|413006566|emb|Z92784.2| 6239 g20991 i0 97.765 48.9897959183673 179 4 91 0 1 179 26475 26653 Caenorhabditis elegans Cosmid F31C3, complete sequence blastn 9602 309 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23575421 23575421 PRJNA657343_P_NODE_10339_length_264_cov_12.330233_g10315_i0 PRJNA657343 10339 264 12.330233 32.55181512 Caenorhabditis briggsae 6238 Nematoda Nematoda 307 4.66e-79   NTclustered gi|2158429559|ref|XM_045243633.1| 6238 g10315 i0 87.786 228.526515151515 262 32 99 0 3 264 1960 2221 Caenorhabditis briggsae Protein CBR-UBQ-1 (Cbr-ubq-1), partial mRNA blastn 60331 307 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;