RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA657343" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Evosea · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA657343 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
622808 622808 PRJNA657343_P_NODE_1561_length_526_cov_2.348008_g1538_i0 PRJNA657343 1561 526 2.348008 12.35052208 Heterostelium album 2086695 Evosea other_Eukaryota 320 1.2799999999999998e-82   NTclustered gi|1160561646|ref|XM_020579038.1| 670386 g1538 i0 77.883 28.9980988593156 529 107 99 8 3 526 916 1439 Polysphondylium pallidum PN500 cell division cycle protein 48 (cdcD), partial mRNA blastn 15253 320 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
3173684 3173684 PRJNA657343_P_NODE_1503_length_534_cov_2.428866_g1480_i0 PRJNA657343 1503 534 2.428866 12.97014444 Didymium quitense 2059305 Evosea other_Eukaryota 385 4.55e-102   NTclustered gi|2329703132|gb|MW239927.1| 2059305 g1480 i0 81.585 98.8801498127341 467 84 87 2 68 533 533 68 Didymium quitense strain MA-Fungi 88326 alpha tubulin (aTUB) gene, partial cds blastn 52802 385 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium quitense
7538310 7538310 PRJNA657343_P_NODE_39086_length_166_cov_0.888889_g39062_i0 PRJNA657343 39086 166 0.888889 1.47555574 Eumycetozoa 142796 Evosea other_Eukaryota 156 1.03e-33   NTclustered gi|3186|emb|X07792.1| 5791 g39062 i0 91.228 69.3795180722892 114 10 69 0 51 164 1506 1393 Physarum polycephalum actin gene blastn 11517 156 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
10827028 10827028 PRJNA657343_P_NODE_10569_length_262_cov_10.474178_g10545_i0 PRJNA657343 10569 262 10.474178 27.44234636 Physarum polycephalum 5791 Evosea other_Eukaryota 215 2.88e-51   NTclustered gi|161207|gb|M21500.1|SLMACT35 5791 g10545 i0 91.139 59.5419847328244 158 14 60 0 1 158 1009 1166 P.polycephalum actin (Ppa35) mRNA, complete cds blastn 15600 215 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
10827096 10827096 PRJNA657343_P_NODE_15649_length_227_cov_2.241573_g15625_i0 PRJNA657343 15649 227 2.241573 5.08837071 Heterostelium album 2086695 Evosea other_Eukaryota 137 5.43e-28   NTclustered gi|1160571874|ref|XM_020575431.1| 670386 g15625 i0 92.632 39.625550660793 95 7 42 0 118 212 242 148 Polysphondylium pallidum PN500 S60 ribosomal protein L36a (rpl36a), partial mRNA blastn 8995 137 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
13377321 13377321 PRJNA657343_P_NODE_6271_length_318_cov_5.836431_g6247_i0 PRJNA657343 6271 318 5.836431 18.55985058 Heterostelium album 2086695 Evosea other_Eukaryota 231 3.57e-56   NTclustered gi|1160556308|ref|XM_020573979.1| 670386 g6247 i0 84.1 0.751572327044025 239 38 75 0 38 276 620 382 Polysphondylium pallidum PN500 actin bundling protein (abpB), partial mRNA blastn 239 231 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
16463191 16463191 PRJNA657343_P_NODE_27513_length_185_cov_1.117647_g27489_i0 PRJNA657343 27513 185 1.117647 2.06764695 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 147 7.039999999999999e-31   NTclustered gi|330797960|ref|XM_003286977.1| 5786 g27489 i0 81.461 8.04864864864865 178 33 96 0 2 179 413 236 Dictyostelium purpureum ubiquitin (DICPUDRAFT_94309), mRNA blastn 1489 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
22300062 22300062 PRJNA657343_P_NODE_13978_length_237_cov_1.569149_g13954_i0 PRJNA657343 13978 237 1.569149 3.71888313 Heterostelium album 2086695 Evosea other_Eukaryota 135 2.0500000000000003e-27   NTclustered gi|1160564538|ref|XM_020583061.1| 670386 g13954 i0 83.108 13.253164556962 148 25 62 0 6 153 658 511 Polysphondylium pallidum PN500 DEAD/DEAH box helicase domain-containing protein (ifdA), partial mRNA blastn 3141 135 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
23575507 23575507 PRJNA657343_P_NODE_16379_length_223_cov_2.781609_g16355_i0 PRJNA657343 16379 223 2.781609 6.20298807 Heterostelium album 2086695 Evosea other_Eukaryota 152 1.9e-32   NTclustered gi|1160566122|ref|XM_020580683.1| 670386 g16355 i0 82.584 6.3677130044843 178 25 78 6 36 210 1305 1131 Polysphondylium pallidum PN500 inositol-3-phosphate synthase (ino1), partial mRNA blastn 1420 152 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
23575908 23575908 PRJNA657343_P_NODE_599_length_702_cov_6.995406_g586_i0 PRJNA657343 599 702 6.995406 49.10775012 Heterostelium album 2086695 Evosea other_Eukaryota 662 0   NTclustered gi|1160557950|ref|XM_020575808.1| 670386 g586 i0 84.992 306.878917378917 653 96 93 2 49 700 1332 681 Polysphondylium pallidum PN500 ubiquitin (ubqI), partial mRNA blastn 215429 662 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
24849566 24849566 PRJNA657343_P_NODE_580_length_710_cov_4.291982_g567_i0 PRJNA657343 580 710 4.291982 30.4730722 Heterostelium album 2086695 Evosea other_Eukaryota 390 1.32e-103   NTclustered gi|1160551744|ref|XM_020571206.1| 670386 g567 i0 78.037 88.9267605633803 642 125 89 13 12 645 1465 2098 Polysphondylium pallidum PN500 heat shock protein (hspB), partial mRNA blastn 63138 390 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;