RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA657343" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA657343 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22300379 22300379 PRJNA657343_P_NODE_36578_length_168_cov_0.873950_g36554_i0 PRJNA657343 36578 168 0.87395 1.468236 Patiria miniata 46514 Echinodermata other_Eukaryota 67.6 5.04e-7   NTclustered gi|1944848411|ref|XM_038193245.1| 46514 g36554 i0 95.238 1.75 42 2 25 0 13 54 2266 2307 PREDICTED: Patiria miniata tetratricopeptide repeat protein 25-like (LOC119722858), transcript variant X6, mRNA blastn 294 67.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
24850698 24850698 PRJNA657343_S_NODE_620_length_614_cov_153.442478_g603_i0 PRJNA657343 620 614 153.442478 942.13681492 Ophiomastix wendtii 7623 Echinodermata other_Eukaryota 1044 0   NTclustered gi|401712733|gb|JX160103.1| 7623 g603 i0 98.02 51.2947882736156 606 2 98 5 6 608 369 967 Ophiocoma wendtii clone 00156 G-cadherin mRNA, partial cds blastn 31495 1044 1 Eukaryota Opisthokonta Metazoa Echinodermata Ophiuroidea Amphilepidida Ophiocomidae Ophiomastix Ophiomastix wendtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;