RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA657343" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA657343 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1898986 1898986 PRJNA657343_P_NODE_1502_length_534_cov_3.746392_g1479_i0 PRJNA657343 1502 534 3.746392 20.00573328 Ripella sp. 805 1217113 Discosea other_Eukaryota 793 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g1479 i0 94.275 98.2565543071161 524 21 97 9 4 523 519 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 52469 793 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
2435589 2435589 PRJNA657343_P_NODE_21922_length_200_cov_3.139073_g21898_i0 PRJNA657343 21922 200 3.139073 6.278146 Ripella 1217112 Discosea other_Eukaryota 300 5.62e-77   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g21898 i0 98.817 79.79 169 1 84 1 31 198 718 886 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 15958 300 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
4450935 4450935 PRJNA657343_P_NODE_33164_length_172_cov_1.975610_g33140_i0 PRJNA657343 33164 172 1.97561 3.3980492 Ripella tribonemae 2047823 Discosea other_Eukaryota 254 3.68e-63   NTclustered gi|1269228471|gb|MF683596.1| 2047823 g33140 i0 95.062 95.046511627907 162 6 94 2 4 165 1132 1291 Ripella tribonemae clone 22.1.14 18S ribosomal RNA gene, partial sequence blastn 16348 254 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella tribonemae
5726486 5726486 PRJNA657343_P_NODE_32685_length_173_cov_1.903226_g32661_i0 PRJNA657343 32685 173 1.903226 3.29258098 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 128 2.35e-25   NTclustered gi|470486807|ref|XM_004344593.1| 1257118 g32661 i0 81.646 1.24277456647399 158 25 90 4 16 171 267 422 Acanthamoeba castellanii str. Neff MC family transporter: phosphate, putative (ACA1_278610), partial mRNA blastn 215 128 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8276249 8276249 PRJNA657343_P_NODE_25667_length_189_cov_1.935714_g25643_i0 PRJNA657343 25667 189 1.935714 3.65849946 Ripella sp. 805 1217113 Discosea other_Eukaryota 261 2.4800000000000002e-65   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g25643 i0 100 90.984126984127 141 0 75 0 3 143 545 685 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 17196 261 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
10827195 10827195 PRJNA657343_P_NODE_23289_length_196_cov_1.074830_g23265_i0 PRJNA657343 23289 196 1.07483 2.1066668 Paramoeba branchiphila 308475 Discosea other_Eukaryota 124 3.5399999999999995e-24   NTclustered gi|226347442|gb|FJ807261.1| 308475 g23265 i0 78.646 85.6632653061225 192 37 97 4 5 194 1009 820 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 16790 124 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
14653377 14653377 PRJNA657343_S_NODE_7252_length_321_cov_8.522059_g7227_i0 PRJNA657343 7252 321 8.522059 27.35580939 Ripella sp. PS2 1217116 Discosea other_Eukaryota 579 1.1199999999999997e-160   NTclustered gi|399764205|gb|JQ271716.1| 1217116 g7227 i0 99.684 98.6417445482866 316 1 98 0 1 316 878 563 Ripella sp. PS2 18S ribosomal RNA gene, partial sequence blastn 31664 579 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. PS2
15189038 15189038 PRJNA657343_S_NODE_31232_length_157_cov_5.898148_g31207_i0 PRJNA657343 31232 157 5.898148 9.26009236 Vannellidae 95227 Discosea other_Eukaryota 257 2.5600000000000003e-64   NTclustered gi|399764216|gb|JQ271727.1| 1215631 g31207 i0 96.203 100.993630573248 158 5 100 1 1 157 569 412 Vannella sp. BEN3V 18S ribosomal RNA gene, partial sequence blastn 15856 257 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. BEN3V
15926143 15926143 PRJNA657343_P_NODE_45913_length_157_cov_21.564815_g45889_i0 PRJNA657343 45913 157 21.564815 33.85675955 Vannella sp. strain CAZ6/I 325077 Discosea other_Eukaryota 233 4.31e-57   NTclustered gi|62865939|gb|AY929914.1| 325077 g45889 i0 94.702 96.3375796178344 151 6 95 2 4 152 1504 1654 Vannella sp. strain CAZ6/I 18S small subunit ribosomal RNA gene, partial sequence blastn 15125 233 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CAZ6/I
15926159 15926159 PRJNA657343_P_NODE_4793_length_351_cov_15.456954_g4770_i0 PRJNA657343 4793 351 15.456954 54.25390854 Platyamoeba sp. strain CAZ7/I 325065 Discosea other_Eukaryota 427 4.72e-115   NTclustered gi|62865947|gb|AY929922.1| 325065 g4770 i0 96.887 74.0968660968661 257 4 73 4 3 257 1318 1572 Platyamoeba sp. strain CAZ7/I 18S small subunit ribosomal RNA gene, partial sequence blastn 26008 427 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba sp. strain CAZ7/I
21025793 21025793 PRJNA657343_P_NODE_917_length_621_cov_6.094406_g899_i0 PRJNA657343 917 621 6.094406 37.84626126 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 255 4.37e-63   NTclustered gi|470483818|ref|XM_004343959.1| 1257118 g899 i0 78.45 5.02093397745572 413 73 66 13 52 459 55 456 Acanthamoeba castellanii str. Neff Vtype ATPase, C subunit (ACA1_053290), partial mRNA blastn 3118 255 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23575947 23575947 PRJNA657343_P_NODE_899_length_625_cov_2.531250_g881_i0 PRJNA657343 899 625 2.53125 15.8203125 Paramoeba branchiphila 308475 Discosea other_Eukaryota 364 7.009999999999998e-96   NTclustered gi|226347442|gb|FJ807261.1| 308475 g881 i0 79.423 79.3392 520 101 83 6 106 622 1042 526 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 49587 364 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;