RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA657343" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA657343 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1899186 1899186 PRJNA657343_P_NODE_32142_length_174_cov_2.264000_g32118_i0 PRJNA657343 32142 174 2.264 3.93936 Polychytrium aggregatum 110093 Fungi Fungi 158 3.02e-34   NTclustered gi|2432152064|ref|XM_053105682.1| 110093 g32118 i0 85.811 70.2298850574713 148 21 85 0 1 148 383 530 Polychytrium aggregatum ribosomal protein L10e/L16 (BJ171DRAFT_137240), mRNA blastn 12220 158 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
9551418 9551418 PRJNA657343_P_NODE_15708_length_227_cov_1.415730_g15684_i0 PRJNA657343 15708 227 1.41573 3.2137071 Fimicolochytrium jonesii 1396493 Fungi Fungi 124 4.22e-24   NTclustered gi|2432097441|ref|XM_053068119.1| 1396493 g15684 i0 78.173 4.40969162995595 197 41 86 2 13 208 392 197 Fimicolochytrium jonesii ribosomal protein S8 (EV422DRAFT_500152), partial mRNA blastn 1001 124 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
15926014 15926014 PRJNA657343_P_NODE_3453_length_398_cov_26.670487_g3430_i0 PRJNA657343 3453 398 26.670487 106.14853826 Polychytrium aggregatum 110093 Fungi Fungi 215 4.59e-51   NTclustered gi|2432155310|ref|XM_053111519.1| 110093 g3430 i0 77.546 26.5502512562814 383 68 94 14 19 392 440 67 Polychytrium aggregatum 60S ribosomal protein L23 (BJ171DRAFT_510921), mRNA blastn 10567 215 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;