RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA657343" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA657343 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4450730 4450730 PRJNA657343_P_NODE_16784_length_221_cov_2.436047_g16760_i0 PRJNA657343 16784 221 2.436047 5.38366387 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 259 1.08e-64   NTclustered gi|657012465|gb|KF302574.1| 2850 g16760 i0 88.073 4.18552036199095 218 26 99 0 1 218 72 289 Phaeodactylum tricornutum clone C567 ribosomal protein mRNA, partial cds blastn 925 259 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
5726641 5726641 PRJNA657343_P_NODE_47525_length_152_cov_3.000000_g47501_i0 PRJNA657343 47525 152 3 4.56 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 163 5.5e-36   NTclustered gi|657012511|gb|KF302595.1| 2850 g47501 i0 86.577 0.980263157894737 149 18 97 2 3 150 247 100 Phaeodactylum tricornutum clone C854 ubiquitin-ribosomal protein fusion S27a mRNA, partial cds blastn 149 163 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
13377215 13377215 PRJNA657343_P_NODE_3891_length_380_cov_3.422961_g3868_i0 PRJNA657343 3891 380 3.422961 13.0072518 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 268 3.2999999999999995e-67   NTclustered gi|657012369|gb|KF302532.1| 2850 g3868 i0 88.94 0.571052631578947 217 24 57 0 75 291 10 226 Phaeodactylum tricornutum clone C80 40S ribosomal protein mRNA, complete cds blastn 217 268 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;