RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA657343" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA657343 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5726466 5726466 PRJNA657343_P_NODE_30745_length_177_cov_2.031250_g30721_i0 PRJNA657343 30745 177 2.03125 3.5953125 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 62.1 2.48e-5   NTclustered gi|401413491|ref|XM_003886144.1| 572307 g30721 i0 97.222 3.74011299435028 36 1 20 0 20 55 1170 1135 Neospora caninum Liverpool conserved hypothetical protein (NCLIV_065930), partial mRNA blastn 662 62.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
13377080 13377080 PRJNA657343_P_NODE_26931_length_186_cov_1.824818_g26907_i0 PRJNA657343 26931 186 1.824818 3.39416148 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 82.4 2.03e-11   NTclustered gi|1472916181|ref|XM_026338600.1| 88456 g26907 i0 86.667 0.403225806451613 75 8 40 2 89 162 1472 1399 PREDICTED: Cyclospora cayetanensis dihydrolipoyl dehydrogenase 1, mitochondrial (LOC34617459), mRNA blastn 75 82.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
15926152 15926152 PRJNA657343_P_NODE_4673_length_355_cov_1.238562_g4650_i0 PRJNA657343 4673 355 1.238562 4.3968951 Plasmodium giganteum 195938 SAR_Eukaryotes SAR_Eukaryotes 95.3 5.5e-15   NTclustered gi|702072938|emb|LN482942.1| 195938 g4650 i0 90.278 0.202816901408451 72 7 20 0 280 351 558 487 Plasmodium giganteum partial RNR1 gene for putative ribonucleoside-diphosphate reductase, large subunit blastn 72 95.3 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium giganteum
16463214 16463214 PRJNA657343_P_NODE_46793_length_154_cov_7.219048_g46769_i0 PRJNA657343 46793 154 7.219048 11.11733392 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 278 1.92e-70   NTclustered gi|14495562|gb|L21708.2|PFA34K 5821 g46769 i0 100 99.3181818181818 150 0 97 0 5 154 1087 938 Plasmodium berghei p23-like protein mRNA, partial cds blastn 15295 278 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
21025442 21025442 PRJNA657343_P_NODE_22677_length_198_cov_1.033557_g22653_i0 PRJNA657343 22677 198 1.033557 2.04644286 Babesia bigemina 5866 SAR_Eukaryotes SAR_Eukaryotes 165 2.11e-36   NTclustered gi|833483999|ref|XM_012911664.1| 5866 g22653 i0 83.616 54.1313131313131 177 28 89 1 23 198 234 58 Babesia bigemina 60S ribosomal protein L44 protein, putative partial mRNA blastn 10718 165 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bigemina
24112331 24112331 PRJNA657343_P_NODE_26639_length_187_cov_1.420290_g26615_i0 PRJNA657343 26639 187 1.42029 2.6559423 root 1 Root_unresolved Root_unresolved 91.6 3.39e-14   NTclustered gi|2794944011|ref|XM_067859844.1| 5871 g26615 i0 80.165 2.72727272727273 121 24 65 0 66 186 5524 5644 Babesia caballi mitochondrial import receptor subunit Tom40 (BcabD6B2_33110), partial mRNA blastn 510 91.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia caballi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;