RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA657343" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA657343 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1160375 1160375 PRJNA657343_P_NODE_46901_length_154_cov_3.295238_g46877_i0 PRJNA657343 46901 154 3.295238 5.07466652 Eukaryota 2759 Plants Plants 278 1.92e-70   NTclustered gi|1898545223|gb|MT951391.1| 3078 g46877 i0 99.346 92.1363636363636 153 1 99 0 2 154 523 371 Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence blastn 14189 278 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
8276238 8276238 PRJNA657343_P_NODE_24907_length_191_cov_1.492958_g24883_i0 PRJNA657343 24907 191 1.492958 2.85154978 Auxenochlorella protothecoides 3075 Plants Plants 183 5.5799999999999996e-42   NTclustered gi|1102971032|gb|FJ196315.2| 3075 g24883 i0 84.409 8.49214659685864 186 29 97 0 2 187 621 436 Auxenochlorella protothecoides ribosomal protein S5 (RPS5) mRNA, partial cds blastn 1622 183 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
13914504 13914504 PRJNA657343_S_NODE_3631_length_402_cov_11.495751_g3607_i0 PRJNA657343 3631 402 11.495751 46.21291902 Eukaryota 2759 Plants Plants 701 0   NTclustered gi|1714003650|gb|MN243923.1| 3079 g3607 i0 100 94.1044776119403 379 0 94 0 24 402 872 494 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 37830 701 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
14652038 14652038 PRJNA657343_P_NODE_34912_length_169_cov_1.483333_g34888_i0 PRJNA657343 34912 169 1.483333 2.50683277 Chlamydomonas reinhardtii 3055 Plants Plants 89.8 1.08e-13   NTclustered gi|2082253177|ref|XM_001694173.2| 3055 g34888 i0 81.579 1.46745562130178 114 15 64 4 31 139 372 260 Chlamydomonas reinhardtii ribosomal protein S25 (CHLRE_08g382500v5), mRNA blastn 248 89.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
16463217 16463217 PRJNA657343_P_NODE_9993_length_268_cov_1.378995_g9969_i0 PRJNA657343 9993 268 1.378995 3.6957066 Eukaryota 2759 Plants Plants 163 1.09e-35   NTclustered gi|1861356259|gb|MT377357.1| 51329 g9969 i0 78.295 46.384328358209 258 52 96 4 12 267 566 311 Polytomella parva clone 0016313597 elongation factor 2 (Ef-2) mRNA, complete cds; plastid blastn 12431 163 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella parva
21562472 21562472 PRJNA657343_S_NODE_21797_length_193_cov_1.548611_g21772_i0 PRJNA657343 21797 193 1.548611 2.98881923 Eukaryota 2759 Plants Plants 357 3.1499999999999996e-94   NTclustered gi|1714003650|gb|MN243923.1| 3079 g21772 i0 100 99.8238341968912 193 0 100 0 1 193 281 89 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 19266 357 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;