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contig_metadata

22 rows where analysis = "blastn", bioproject = "PRJNA656952" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA656952 · 22 ✖

analysis 1

  • blastn · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
621882 621882 PRJNA656952_P_NODE_10341_length_388_cov_1.222222_g10154_i0 PRJNA656952 10341 388 1.222222 4.74222136 Caenorhabditis elegans 6239 Nematoda Nematoda 532 1.09e-146   NTclustered gi|2226399|emb|Z75956.1| 6239 g10154 i0 100 6.44845360824742 288 0 74 0 1 288 19701 19414 Caenorhabditis elegans Cosmid R31, complete sequence blastn 2502 532 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
3172948 3172948 PRJNA656952_P_NODE_18703_length_313_cov_0.962500_g18516_i0 PRJNA656952 18703 313 0.9625 3.012625 Radopholus similis 46012 Nematoda Nematoda 562 1.09e-155   NTclustered gi|1537069153|gb|MH499258.1| 46012 g18516 i0 99.355 0.990415335463259 310 2 99 0 4 313 312 3 Radopholus similis eukaryotic translation initiation factor 5A (eIF5A) mRNA, partial cds blastn 310 562 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Radopholus Radopholus similis
3711680 3711680 PRJNA656952_P_NODE_19103_length_310_cov_1.299578_g18916_i0 PRJNA656952 19103 310 1.299578 4.0286918 Caenorhabditis 6237 Nematoda Nematoda 161 4.6099999999999995e-35   NTclustered gi|268563830|ref|XM_002646977.1| 6238 g18916 i0 77.907 3.78387096774194 258 57 83 0 7 264 284 27 Caenorhabditis briggsae Protein CBR-MLC-3 (Cbr-mlc-3), partial mRNA blastn 1173 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
4450012 4450012 PRJNA656952_P_NODE_21364_length_296_cov_1.461883_g21177_i0 PRJNA656952 21364 296 1.461883 4.32717368 Ditylenchus destructor 166010 Nematoda Nematoda 320 6.82e-83   NTclustered gi|347723361|gb|HQ386232.1| 166010 g21177 i0 86.149 102.540540540541 296 41 100 0 1 296 1551 1256 Ditylenchus destructor HSP70-1 mRNA, complete cds blastn 30352 320 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
4450134 4450134 PRJNA656952_P_NODE_26764_length_270_cov_1.563452_g26577_i0 PRJNA656952 26764 270 1.563452 4.2213204 Radopholus similis 46012 Nematoda Nematoda 486 5.7199999999999984e-133   NTclustered gi|197258085|gb|EU659125.1| 46012 g26577 i0 100 3.55925925925926 263 0 97 0 8 270 1106 844 Radopholus similis cathepsin S-like cysteine proteinase mRNA, complete cds blastn 961 486 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Radopholus Radopholus similis
7000634 7000634 PRJNA656952_P_NODE_16306_length_329_cov_1.203125_g16119_i0 PRJNA656952 16306 329 1.203125 3.95828125 Caenorhabditis elegans 6239 Nematoda Nematoda 204 8.08e-48   NTclustered gi|1972295142|ref|NM_073664.7| 6239 g16119 i0 78.438 66.1793313069909 320 63 96 6 3 319 4781 5097 Caenorhabditis elegans Myosin-3 (myo-3), mRNA blastn 21773 204 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9550686 9550686 PRJNA656952_P_NODE_1888_length_715_cov_1.635514_g1745_i0 PRJNA656952 1888 715 1.635514 11.6939251 Ditylenchus destructor 166010 Nematoda Nematoda 597 7.319999999999998e-166   NTclustered gi|321173528|gb|HQ123250.1| 166010 g1745 i0 85.54 68.1748251748252 574 79 80 4 139 710 834 263 Ditylenchus destructor 14-3-3 (14-3-3a) mRNA, complete cds blastn 48745 597 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
9551262 9551262 PRJNA656952_P_NODE_5808_length_479_cov_1.317734_g5621_i0 PRJNA656952 5808 479 1.317734 6.31194586 Radopholus similis 46012 Nematoda Nematoda 863 0   NTclustered gi|300952941|gb|GU360972.1| 46012 g5621 i0 99.165 6.19832985386221 479 4 100 0 1 479 684 1162 Radopholus similis cathepsin B mRNA, complete cds blastn 2969 863 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Radopholus Radopholus similis
10826480 10826480 PRJNA656952_P_NODE_26109_length_273_cov_1.355000_g25922_i0 PRJNA656952 26109 273 1.355 3.69915 Radopholus similis 46012 Nematoda Nematoda 209 1.41e-49   NTclustered gi|1048075091|gb|KT948899.1| 46012 g25922 i0 100 0.413919413919414 113 0 41 0 1 113 120 8 Radopholus similis isolate R01 serine/threonine protein phosphatase mRNA, partial cds blastn 113 209 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Radopholus Radopholus similis
12101860 12101860 PRJNA656952_P_NODE_34630_length_248_cov_1.594286_g34443_i0 PRJNA656952 34630 248 1.594286 3.95382928 Radopholus similis 46012 Nematoda Nematoda 453 5.2600000000000005e-123   NTclustered gi|1048075093|gb|KT948900.1| 46012 g34443 i0 99.597 1 248 1 100 0 1 248 283 530 Radopholus similis isolate R01 copper/zinc superoxide dismutase mRNA, partial cds blastn 248 453 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Radopholus Radopholus similis
14651035 14651035 PRJNA656952_P_NODE_18712_length_313_cov_0.950000_g18525_i0 PRJNA656952 18712 313 0.95 2.9735 Radopholus similis 46012 Nematoda Nematoda 573 5.049999999999998e-159   NTclustered gi|157411572|gb|EF693942.1| 46012 g18525 i0 99.681 2.68051118210863 313 1 100 0 1 313 960 1272 Radopholus similis GHF5 endo-1,4-beta-glucanase precursor (eng2) gene, complete cds blastn 839 573 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Radopholus Radopholus similis
14651334 14651334 PRJNA656952_P_NODE_332_length_1336_cov_4.270784_g254_i0 PRJNA656952 332 1336 4.270784 57.05767424 Pristionchus pacificus 54126 Nematoda Nematoda 1064 0   NTclustered gi|199600269|tpg|BK006064.1| 54126 g254 i0 83.333 77.6002994011976 1158 187 86 4 2 1154 321 1477 TPA_inf: Pristionchus pacificus eukaryotic translation elongation factor 1A (eft-1) mRNA, complete cds blastn 103674 1064 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
14651549 14651549 PRJNA656952_P_NODE_43292_length_241_cov_0.916667_g43105_i0 PRJNA656952 43292 241 0.916667 2.20916747 Radopholus similis 46012 Nematoda Nematoda 440 3.959999999999999e-119   NTclustered gi|197258083|gb|EU659124.1| 46012 g43105 i0 99.585 1 241 1 100 0 1 241 440 680 Radopholus similis cathepsin L-like cysteine proteinase mRNA, complete cds blastn 241 440 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Radopholus Radopholus similis
17200324 17200324 PRJNA656952_P_NODE_32014_length_251_cov_0.865169_g31827_i0 PRJNA656952 32014 251 0.865169 2.17157419 Radopholus similis 46012 Nematoda Nematoda 407 4.2099999999999995e-109   NTclustered gi|300952941|gb|GU360972.1| 46012 g31827 i0 96.386 0.99203187250996006 249 5 99 3 3 251 2 246 Radopholus similis cathepsin B mRNA, complete cds blastn 249 407 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Radopholus Radopholus similis
18474175 18474175 PRJNA656952_P_NODE_11875_length_369_cov_1.168919_g11688_i0 PRJNA656952 11875 369 1.168919 4.31331111 Radopholus similis 46012 Nematoda Nematoda 671 0   NTclustered gi|651209571|gb|KJ617041.1| 46012 g11688 i0 99.458 1 369 2 100 0 1 369 806 1174 Radopholus similis serine carboxypeptidases mRNA, complete cds blastn 369 671 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Radopholus Radopholus similis
18474339 18474339 PRJNA656952_P_NODE_1895_length_714_cov_2.536661_g1752_i0 PRJNA656952 1895 714 2.536661 18.11175954 Radopholus similis 46012 Nematoda Nematoda 1282 0   NTclustered gi|385843185|gb|JN968974.1| 46012 g1752 i0 99.157 0.997198879551821 712 6 99 0 3 714 769 58 Radopholus similis fatty acid and retinol binding protein (far-1) mRNA, complete cds blastn 712 1282 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Radopholus Radopholus similis
18474378 18474378 PRJNA656952_P_NODE_20835_length_299_cov_1.942478_g20648_i0 PRJNA656952 20835 299 1.942478 5.80800922 Radopholus similis 46012 Nematoda Nematoda 545 1.0499999999999999e-150   NTclustered gi|145279866|emb|AM691120.1| 46012 g20648 i0 99.666 1 299 0 100 1 1 299 379 82 Radopholus similis partial mRNA for transthyretin-like protein 4 (ttl-4 gene) blastn 299 545 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Radopholus Radopholus similis
19011380 19011380 PRJNA656952_P_NODE_15995_length_331_cov_1.790698_g15808_i0 PRJNA656952 15995 331 1.790698 5.92721038 Pristionchus 54125 Nematoda Nematoda 261 4.76e-65   NTclustered gi|150984647|gb|EF634985.1| 452809 g15808 i0 87.336 54.1027190332326 229 27 69 2 60 287 253 26 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 27 (rps-27) mRNA, complete cds blastn 17908 261 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
19749559 19749559 PRJNA656952_P_NODE_476_length_1153_cov_2.322222_g384_i0 PRJNA656952 476 1153 2.322222 26.77521966 Heterodera glycines 51029 Nematoda Nematoda 917 0   NTclustered gi|33333844|gb|AF546757.1| 51029 g384 i0 85.6 62.9470945359931 875 124 76 2 241 1114 912 39 Heterodera glycines tropomyosin (trp1) mRNA, complete cds blastn 72578 917 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera glycines
20286670 20286670 PRJNA656952_P_NODE_43076_length_241_cov_2.261905_g42889_i0 PRJNA656952 43076 241 2.261905 5.45119105 Caenorhabditis 6237 Nematoda Nematoda 193 1.23e-44   NTclustered gi|66473315|gb|DQ029116.1| 31234 g42889 i0 89.933 3.00414937759336 149 15 62 0 26 174 349 201 Caenorhabditis remanei small subunit ribosomal protein 30 mRNA, partial cds blastn 724 193 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
21024530 21024530 PRJNA656952_P_NODE_16417_length_328_cov_1.431373_g16230_i0 PRJNA656952 16417 328 1.431373 4.69490344 Heterodera glycines 51029 Nematoda Nematoda 222 2.22e-53   NTclustered gi|50086702|gb|AY672636.1| 51029 g16230 i0 88.889 1.09756097560976 180 20 55 0 2 181 1045 1224 Heterodera glycines unc-87 (unc87) mRNA, complete cds blastn 360 222 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera glycines
24848486 24848486 PRJNA656952_P_NODE_23000_length_287_cov_1.439252_g22813_i0 PRJNA656952 23000 287 1.439252 4.13065324 Heterodera avenae 34510 Nematoda Nematoda 250 8.77e-62   NTclustered gi|1341121474|gb|MG525187.1| 34510 g22813 i0 83.333 2.85017421602787 270 45 94 0 9 278 471 740 Heterodera avenae isolate isotig09722 putative effector protein gene, complete cds blastn 818 250 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera avenae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;