RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA656952" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA656952 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12101841 12101841 PRJNA656952_P_NODE_33530_length_249_cov_0.875000_g33343_i0 PRJNA656952 33530 249 0.875 2.17875 Chondromyces crocatus 52 Bacteria Bacteria 265 2.6599999999999997e-66   NTclustered gi|908353314|gb|CP012159.1| 52 g33343 i0 86.364 99.7550200803213 242 33 97 0 8 249 697031 696790 Chondromyces crocatus strain Cm c5, complete genome blastn 24839 265 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
20286413 20286413 PRJNA656952_P_NODE_22976_length_287_cov_1.841121_g22789_i0 PRJNA656952 22976 287 1.841121 5.28401727 Myxococcus 32 Bacteria Bacteria 531 2.799999999999999e-146   NTclustered gi|2869653495|gb|CP175551.1| 33 g22789 i0 100 7.00348432055749 287 0 100 0 1 287 9424317 9424031 Myxococcus fulvus strain KYC1117 chromosome, complete genome blastn 2010 531 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus
21024873 21024873 PRJNA656952_P_NODE_32357_length_250_cov_0.870056_g32170_i0 PRJNA656952 32357 250 0.870056 2.17514 Labilithrix luteola 1391654 Bacteria Bacteria 139 1.6899999999999999e-28   NTclustered gi|913610804|gb|CP012333.1| 1391654 g32170 i0 100 41.16 75 0 30 0 145 219 10559862 10559788 Labilithrix luteola strain DSM 27648, complete genome blastn 10290 139 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
21024977 21024977 PRJNA656952_P_NODE_36597_length_247_cov_0.885057_g36410_i0 PRJNA656952 36597 247 0.885057 2.18609079 Corallococcus sp. EGB 1521117 Bacteria Bacteria 368 1.95e-97   NTclustered gi|2094564806|gb|CP079946.1| 1521117 g36410 i0 93.522 3.93117408906883 247 16 100 0 1 247 2298320 2298074 Corallococcus sp. EGB chromosome, complete genome blastn 971 368 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. EGB
24848794 24848794 PRJNA656952_P_NODE_37760_length_246_cov_0.890173_g37573_i0 PRJNA656952 37760 246 0.890173 2.18982558 Cystobacter fuscus 43 Bacteria Bacteria 311 3.32e-80   NTclustered gi|2579665545|gb|CP043492.1| 43 g37573 i0 89.712 1.97967479674797 243 25 99 0 4 246 7399524 7399282 Cystobacter fuscus strain Cbf 8 chromosome, complete genome blastn 487 311 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;