RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA656952" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA656952 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3173065 3173065 PRJNA656952_P_NODE_24403_length_281_cov_1.149038_g24216_i0 PRJNA656952 24403 281 1.149038 3.22879678 Luteitalea pratensis 1855912 Bacteria Bacteria 193 1.46e-44   NTclustered gi|1016914409|gb|CP015136.1| 1855912 g24216 i0 81.897 3.08896797153025 232 38 82 4 3 232 1076345 1076574 Luteitalea pratensis strain DSM 100886 chromosome, complete genome blastn 868 193 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea pratensis
10826217 10826217 PRJNA656952_P_NODE_12789_length_359_cov_2.045455_g12602_i0 PRJNA656952 12789 359 2.045455 7.34318345 Acidobacteriota bacterium 1978231 Bacteria Bacteria 357 6.44e-94   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g12602 i0 86.145 153.880222841226 332 45 92 1 29 359 3298525 3298194 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 55243 357 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
14651128 14651128 PRJNA656952_P_NODE_23592_length_284_cov_2.554502_g23405_i0 PRJNA656952 23592 284 2.554502 7.25478568 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 486 6.069999999999999e-133   NTclustered gi|31789464|gb|AY281356.1| 171953 g23405 i0 97.535 165.383802816901 284 7 100 0 1 284 11022 11305 Uncultured Acidobacteria bacterium clone 41b15 genomic sequence blastn 46969 486 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;