RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA656952" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA656952 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9550907 9550907 PRJNA656952_P_NODE_29588_length_257_cov_1.641304_g29401_i0 PRJNA656952 29588 257 1.641304 4.21815128 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 137 6.27e-28   NTclustered gi|2795039278|ref|XM_067938479.1| 4785 g29401 i0 82.692 4.98832684824903 156 25 60 2 86 240 81 235 Phytophthora cinnamomi iron sulfur cluster assembly protein 1 (IUM83_13781), partial mRNA blastn 1282 137 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
13376627 13376627 PRJNA656952_P_NODE_40371_length_244_cov_0.900585_g40184_i0 PRJNA656952 40371 244 0.900585 2.1974274 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.022   NTclustered gi|145519414|ref|XM_001445537.1| 5888 g40184 i0 100 0.114754098360656 28 0 11 0 48 75 299 272 Paramecium tetraurelia uncharacterized protein (GSPATT00013624001), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
24848960 24848960 PRJNA656952_P_NODE_44600_length_228_cov_2.129032_g44413_i0 PRJNA656952 44600 228 2.129032 4.85419296 Eimeria maxima 5804 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.02   NTclustered gi|915124244|ref|XM_013477932.1| 5804 g44413 i0 100 0.12280701754386 28 0 12 0 193 220 84 57 Eimeria maxima hypothetical protein, conserved partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;