RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA645397" and tax_phylum = "Basidiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA645397 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4447333 4447333 PRJNA645397_P_NODE_4504_length_250_cov_1.034826_g4431_i0 PRJNA645397 4504 250 1.034826 2.587065 Malassezia restricta 76775 Fungi Fungi 403 5.43e-108   NTclustered gi|1546631533|ref|XM_027627427.1| 76775 g4431 i0 99.107 1.124 224 2 90 0 27 250 1089 1312 Malassezia restricta carbamoyl-phosphate synthase small subunit (MRET_0800), partial mRNA blastn 281 403 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
4987460 4987460 PRJNA645397_P_NODE_10904_length_162_cov_1.601770_g10831_i0 PRJNA645397 10904 162 1.60177 2.5948674 Basidiomycota 5204 Fungi Fungi 243 7.45e-60   NTclustered gi|92111142|gb|DQ459616.1| 5003 g10831 i0 99.254 82.7160493827161 134 1 83 0 1 134 210 77 Sporidiobolus pararoseus isolate C44 18S small subunit ribosomal RNA gene, partial sequence blastn 13400 243 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Sporobolomyces Sporobolomyces pararoseus
8272830 8272830 PRJNA645397_P_NODE_10487_length_164_cov_0.904348_g10414_i0 PRJNA645397 10487 164 0.904348 1.48313072 Schizophyllum commune 5334 Fungi Fungi 224 2.74e-54   NTclustered gi|10179764|gb|AF249362.1|AF249362 5334 g10414 i0 97.692 4.05487804878049 130 3 79 0 34 163 8 137 Schizophyllum commune strain 1-82 intergenic spacer 2, partial sequence blastn 665 224 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Schizophyllaceae Schizophyllum Schizophyllum commune
10823836 10823836 PRJNA645397_P_NODE_5889_length_215_cov_0.939759_g5816_i0 PRJNA645397 5889 215 0.939759 2.02048185 Malassezia restricta 76775 Fungi Fungi 152 1.82e-32   NTclustered gi|1546632462|ref|XM_027627891.1| 76775 g5816 i0 98.824 0.395348837209302 85 1 40 0 131 215 1917 1833 Malassezia restricta heat shock 70kDa protein 1/2/6/8 (MRET_1264), partial mRNA blastn 85 152 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;